Gene: kpna6 - ENSDARG00000044980 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000044980
Name	kpna6
Description	karyopherin alpha 6 (importin alpha 7) [Source:ZFIN;Acc:ZDB-GENE-130530-626]
Organism	Danio rerio (zebrafish)
Synonym(s)	zmp:0000000623
Orthologs(s)	24 orthologs
Paralog(s)	7 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	2.35e3 2.35e3	92.15 92.15	AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000011Blastula:1k-cell ZFS:0000015Blastula:Dome	2.74e3 2.74e3 5.07e3	90.81 90.81 83.04	AEIR AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	2.81e3 2.81e3	90.60 90.60	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	3.69e3 3.69e3	87.64 87.64	AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	3.71e3 3.71e3	87.57 87.57	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	4.35e3 4.35e3	85.44 85.44	AEIR AEIR
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	4.58e3 4.58e3	84.68 84.68	AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	4.87e3 4.87e3 6.73e3	83.69 83.69 77.47	AEIR AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	5.06e3 5.06e3	83.07 83.07	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	5.31e3 5.31e3	82.22 82.22	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	5.66e3 5.66e3 9.02e3	81.06 81.06 69.79	AEIR AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	5.87e3 5.87e3	80.35 80.35	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	5.88e3 5.88e3	80.32 80.32	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000036Larval:Day 4	6.06e3 6.06e3 7.62e3	79.72 79.72 74.48	AEIR AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000019Gastrula:Shield ZFS:0000022Gastrula:Bud	6.73e3 6.73e3 6.89e3	77.46 77.46 76.92	AEIR AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	6.92e3 6.92e3	76.82 76.82	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	7.00e3 7.00e3	76.58 76.58	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	7.14e3 7.14e3	76.08 76.08	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	7.16e3 7.16e3	76.02 76.02	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	7.17e3 7.17e3	75.99 75.99	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000033Hatching:Long-pec ZFS:0000037Larval:Day 5 UBERON:0000068embryo stage ZFS:0000029Pharyngula:Prim-5 UBERON:0004707pharyngula stage	7.19e3 7.19e3 7.30e3 8.06e3 8.26e3 8.58e3	75.92 75.92 75.56 73.01 72.36 71.28	AEIR AEIR AEIR AEIR AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	7.34e3 7.34e3	75.44 75.44	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	7.75e3 7.75e3	74.04 74.04	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	7.77e3 7.77e3	73.99 73.99	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	7.92e3 7.92e3	73.47 73.47	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	18 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	18 genes ENSG00000025800 KPNA6 ENSMUSG00000003731 Kpna6 ENSPTRG00000000471 KPNA6 ENSGGOG00000004016 KPNA6 ENSMMUG00000008455 KPNA6 ENSRNOG00000000127 Kpna6 ENSBTAG00000002896 KPNA6 ENSECAG00000004549 KPNA6 ENSOCUG00000017669 KPNA6 ENSCAFG00000010737 KPNA6 ENSFCAG00000000456 KPNA6 ENSCPOG00000011972 KPNA6 ENSEEUG00000010912 KPNA6 ENSMODG00000017528 KPNA6 ENSOANG00000003840 ENSGALG00000003383 KPNA6 ENSACAG00000004691 KPNA6 ENSXETG00000005242 kpna6	Compare expression	[+]
Bilateria	24 species Homo sapiens (human) Mus musculus (mouse) Drosophila melanogaster (fruit fly) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog) Drosophila ananassae Drosophila mojavensis Drosophila simulans Drosophila virilis Drosophila yakuba	24 genes ENSG00000025800 KPNA6 ENSMUSG00000003731 Kpna6 FBgn0024889 Kap-alpha1 ENSPTRG00000000471 KPNA6 ENSGGOG00000004016 KPNA6 ENSMMUG00000008455 KPNA6 ENSRNOG00000000127 Kpna6 ENSBTAG00000002896 KPNA6 ENSECAG00000004549 KPNA6 ENSOCUG00000017669 KPNA6 ENSCAFG00000010737 KPNA6 ENSFCAG00000000456 KPNA6 ENSCPOG00000011972 KPNA6 ENSEEUG00000010912 KPNA6 ENSMODG00000017528 KPNA6 ENSOANG00000003840 ENSGALG00000003383 KPNA6 ENSACAG00000004691 KPNA6 ENSXETG00000005242 kpna6 FBgn0100588 GF23594 FBgn0134403 GI11643 FBgn0186502 GD14829 FBgn0198584 GJ11324 FBgn0236963 GE19625	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000044980.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Deuterostomia	1 gene ENSDARG00000042030 kpna5	Compare expression	[+]
Bilateria	2 genes ENSDARG00000016360 kpna1 ENSDARG00000042030 kpna5	Compare expression	[+]
Opisthokonta	6 genes ENSDARG00000016360 kpna1 ENSDARG00000023190 kpna4 ENSDARG00000027169 kpna7 ENSDARG00000038066 kpna2 ENSDARG00000042030 kpna5 ENSDARG00000052641 kpna3	Compare expression	[+]
Eukaryota	7 genes ENSDARG00000016360 kpna1 ENSDARG00000020158 spag6 ENSDARG00000023190 kpna4 ENSDARG00000027169 kpna7 ENSDARG00000038066 kpna2 ENSDARG00000042030 kpna5 ENSDARG00000052641 kpna3	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000044980.

Cross-references

Ensembl	ENSDARG00000044980 (kpna6)
ZFIN	ZDB-GENE-130530-626 (kpna6)
EMBL	CU633192
Uniprot/SPTREMBL	E7F7U9, E7F7U9_DANRE