D. rerio Gene: ablim1b - ENSDARG00000045064 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000045064
Nameablim1b
Descriptionactin binding LIM protein 1b [Source:ZFIN;Acc:ZDB-GENE-050327-91]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkeyp-84e12.1, zgc:112954
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
200
  • 200
  • 1.15e4
  • 1.19e4
99.33
  • 99.33
  • 61.55
  • 60.31
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
580
  • 580
  • 694
98.06
  • 98.06
  • 97.68
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
636
  • 636
97.87
  • 97.87
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
661
  • 661
  • 4.46e3
97.79
  • 97.79
  • 85.08
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
1.38e3
  • 1.38e3
  • 2.09e3
  • 3.77e3
  • 4.37e3
  • 4.79e3
  • 8.59e3
  • 9.13e3
  • 9.46e3
  • 9.53e3
  • 1.03e4
95.37
  • 95.37
  • 93.00
  • 87.39
  • 85.38
  • 83.95
  • 71.25
  • 69.42
  • 68.32
  • 68.10
  • 65.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.55e3
  • 1.55e3
94.81
  • 94.81
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.69e3
  • 1.69e3
94.35
  • 94.35
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.21e3
  • 2.21e3
92.62
  • 92.62
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000068embryo stage
2.47e3
  • 2.47e3
  • 2.73e3
  • 3.45e3
  • 3.63e3
  • 3.68e3
  • 5.54e3
  • 6.63e3
  • 6.96e3
  • 7.46e3
  • 1.13e4
  • 1.20e4
  • 1.21e4
  • 1.23e4
  • 1.50e4
91.73
  • 91.73
  • 90.87
  • 88.45
  • 87.84
  • 87.69
  • 81.44
  • 77.81
  • 76.71
  • 75.03
  • 62.07
  • 59.84
  • 59.38
  • 58.88
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.74e3
  • 2.74e3
90.82
  • 90.82
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.22e3
  • 3.22e3
89.23
  • 89.23
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.27e3
  • 3.27e3
89.04
  • 89.04
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
4.22e3
  • 4.22e3
  • 9.54e3
85.87
  • 85.87
  • 68.07
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
4.58e3
  • 4.58e3
  • 5.62e3
  • 8.07e3
84.65
  • 84.65
  • 81.18
  • 72.97
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.82e3
  • 4.82e3
83.87
  • 83.87
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.35e3
  • 5.35e3
82.10
  • 82.10
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.43e3
  • 6.43e3
78.46
  • 78.46
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.47e3
  • 6.47e3
78.35
  • 78.35
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.67e3
  • 9.67e3
67.62
  • 67.62
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
1.01e4
  • 1.01e4
  • 1.16e4
  • 1.61e4
  • 1.69e4
66.17
  • 66.17
  • 61.33
  • 45.98
  • 43.58
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.02e4
  • 1.02e4
  • 1.03e4
65.88
  • 65.88
  • 65.62
AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.21e4
  • 1.21e4
59.37
  • 59.37
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.04
  • 59.04
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.91
  • 56.91
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.58
  • 56.58
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.16
  • 56.16
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.31e4
  • 1.31e4
56.14
  • 56.14
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
1.35e4
  • 1.35e4
  • 1.38e4
  • 1.74e4
54.73
  • 54.73
  • 53.86
  • 41.75
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.36e4
  • 1.36e4
54.36
  • 54.36
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.50e4
  • 1.50e4
49.73
  • 49.73
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Eumetazoa2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000045064.

Cross-references

EnsemblENSDARG00000045064 (ablim1b)
ZFINZDB-GENE-050327-91 (ablim1b)
EMBLBC091932, BX465198, CU464184, CU915376
Uniprot/SPTREMBLE9QIZ2, E9QIZ2_DANRE, F1REG0, F1REG0_DANRE, Q58EF7, Q58EF7_DANRE, U3JA64, U3JA64_DANRE, U3JB13, U3JB13_DANRE

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