D. rerio Gene: lcmt1 - ENSDARG00000045140 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000045140
Namelcmt1
Descriptionleucine carboxyl methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040912-75]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:101094
Orthologs(s)25 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.71e3
  • 2.71e3
90.93
  • 90.93
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000028Segmentation:26+ somites
  • UBERON:0000106zygote stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
4.27e3
  • 4.27e3
  • 5.91e3
  • 7.36e3
  • 7.39e3
  • 7.84e3
  • 7.95e3
  • 8.10e3
  • 8.25e3
  • 8.46e3
  • 8.62e3
  • 8.90e3
  • 8.98e3
  • 9.27e3
  • 9.30e3
  • 9.46e3
  • 1.44e4
  • 1.46e4
  • 1.50e4
85.71
  • 85.71
  • 80.21
  • 75.35
  • 75.27
  • 73.73
  • 73.39
  • 72.90
  • 72.37
  • 71.67
  • 71.14
  • 70.21
  • 69.93
  • 68.97
  • 68.85
  • 68.31
  • 51.82
  • 51.12
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
4.97e3
  • 4.97e3
  • 5.89e3
  • 1.45e4
83.37
  • 83.37
  • 80.26
  • 51.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.13e3
  • 5.13e3
82.82
  • 82.82
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.18e3
  • 5.18e3
82.67
  • 82.67
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
5.19e3
  • 5.19e3
  • 7.56e3
  • 8.36e3
  • 9.63e3
  • 1.06e4
  • 1.07e4
82.64
  • 82.64
  • 74.70
  • 72.00
  • 67.74
  • 64.58
  • 64.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
5.33e3
  • 5.33e3
  • 5.36e3
  • 5.61e3
  • 1.11e4
82.15
  • 82.15
  • 82.06
  • 81.21
  • 62.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
5.85e3
  • 5.85e3
  • 6.87e3
  • 7.20e3
  • 1.03e4
  • 1.06e4
80.42
  • 80.42
  • 76.99
  • 75.88
  • 65.38
  • 64.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
5.97e3
  • 5.97e3
80.02
  • 80.02
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.50e3
  • 6.50e3
78.25
  • 78.25
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.53e3
  • 6.53e3
78.12
  • 78.12
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0004707pharyngula stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000068embryo stage
6.69e3
  • 6.69e3
  • 7.08e3
  • 7.27e3
  • 7.63e3
  • 7.93e3
  • 8.92e3
  • 9.10e3
  • 9.38e3
  • 1.01e4
  • 1.04e4
77.59
  • 77.59
  • 76.30
  • 75.67
  • 74.44
  • 73.44
  • 70.12
  • 69.52
  • 68.61
  • 66.19
  • 65.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.74e3
  • 6.74e3
77.43
  • 77.43
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.90e3
  • 6.90e3
76.90
  • 76.90
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
6.93e3
  • 6.93e3
  • 8.02e3
76.81
  • 76.81
  • 73.16
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.10e3
  • 7.10e3
76.22
  • 76.22
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.27e3
  • 7.27e3
75.67
  • 75.67
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
7.50e3
  • 7.50e3
  • 8.56e3
  • 9.94e3
74.89
  • 74.89
  • 71.34
  • 66.70
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.76e3
  • 7.76e3
74.03
  • 74.03
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.79e3
  • 7.79e3
73.92
  • 73.92
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.01e3
  • 8.01e3
73.19
  • 73.19
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.06e3
  • 8.06e3
73.02
  • 73.02
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
8.32e3
  • 8.32e3
  • 1.00e4
72.14
  • 72.14
  • 66.38
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.44e3
  • 8.44e3
71.73
  • 71.73
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
8.46e3
  • 8.46e3
71.67
  • 71.67
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.56e3
  • 8.56e3
71.33
  • 71.33
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
8.66e3
  • 8.66e3
  • 1.50e4
70.99
  • 70.99
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
8.93e3
  • 8.93e3
70.10
  • 70.10
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.08e3
  • 9.08e3
69.60
  • 69.60
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
9.57e3
  • 9.57e3
  • 9.58e3
67.95
  • 67.95
  • 67.92
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.20
  • 66.20
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.54
  • 65.54
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSDARG00000045140.

Cross-references

EnsemblENSDARG00000045140 (lcmt1)
ZFINZDB-GENE-040912-75 (lcmt1)
EMBLCR352324, FP236860
Uniprot/SPTREMBLF1R781, F1R781_DANRE

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