D. rerio Gene: cox6b1 - ENSDARG00000045230 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000045230
Namecox6b1
Descriptioncytochrome c oxidase subunit VIb polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-040718-448]
OrganismDanio rerio (zebrafish)
Synonym(s)fa92g05, si:dkey-161j23.2, wu:fa92g05, zgc:92631

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
218
  • 218
  • 1.47e3
99.27
  • 99.27
  • 95.08
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
269
  • 269
99.10
  • 99.10
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
277
  • 277
99.08
  • 99.08
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
460
  • 460
98.46
  • 98.46
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
573
  • 573
98.08
  • 98.08
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
595
  • 595
98.01
  • 98.01
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
657
  • 657
97.80
  • 97.80
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
846
  • 846
  • 930
  • 1.74e3
97.17
  • 97.17
  • 96.89
  • 94.17
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000019Gastrula:Shield
931
  • 931
  • 1.37e3
  • 1.56e3
  • 1.99e3
  • 2.46e3
  • 6.04e3
  • 6.79e3
  • 9.34e3
  • 1.32e4
  • 1.33e4
  • 1.35e4
  • 1.35e4
  • 1.37e4
  • 1.38e4
96.89
  • 96.89
  • 95.42
  • 94.76
  • 93.33
  • 91.75
  • 79.78
  • 77.26
  • 68.74
  • 55.80
  • 55.48
  • 54.90
  • 54.63
  • 54.06
  • 53.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
992
  • 992
  • 1.52e3
  • 2.51e3
  • 2.63e3
  • 3.33e3
  • 7.02e3
  • 9.72e3
  • 1.25e4
  • 1.33e4
96.68
  • 96.68
  • 94.92
  • 91.58
  • 91.21
  • 88.85
  • 76.48
  • 67.46
  • 58.23
  • 55.38
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.10e3
  • 1.10e3
96.32
  • 96.32
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.12e3
  • 1.12e3
  • 2.11e3
96.26
  • 96.26
  • 92.94
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.42e3
  • 1.42e3
95.26
  • 95.26
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.68e3
  • 1.68e3
  • 6.22e3
94.37
  • 94.37
  • 79.18
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.71e3
  • 1.71e3
94.29
  • 94.29
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.07e3
  • 2.07e3
93.07
  • 93.07
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.51e3
  • 2.51e3
91.61
  • 91.61
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.06e3
  • 3.06e3
89.76
  • 89.76
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.29e3
  • 3.29e3
89.00
  • 89.00
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
4.02e3
  • 4.02e3
  • 7.37e3
  • 9.77e3
  • 9.93e3
86.55
  • 86.55
  • 75.33
  • 67.30
  • 66.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.40e3
  • 4.40e3
85.28
  • 85.28
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
4.53e3
  • 4.53e3
  • 7.49e3
84.82
  • 84.82
  • 74.92
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.84e3
  • 6.84e3
77.09
  • 77.09
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
1.02e4
  • 1.02e4
  • 1.37e4
  • 1.47e4
  • 1.53e4
65.89
  • 65.89
  • 54.10
  • 50.78
  • 48.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.24e4
  • 1.24e4
58.60
  • 58.60
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.26e4
  • 1.26e4
57.82
  • 57.82
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.35e4
  • 1.35e4
54.70
  • 54.70
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
49.36
  • 49.36
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.88
  • 48.88
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC076119, BX547934
EnsemblENSDARG00000045230 (cox6b1)
Uniprot/SPTREMBLQ6DH63, Q6DH63_DANRE
ZFINZDB-GENE-040718-448 (cox6b1)

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