D. rerio Gene: h3f3b.1 - ENSDARG00000045248 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000045248
Nameh3f3b.1
DescriptionH3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
OrganismDanio rerio (zebrafish)
Synonym(s)a5pl96, h3f3c, his3.3b, q7zv67, wu:fa25h06, wu:fa96g06, wu:fb07a08, wu:fb36f01, zgc:110292, zgc:174300, zgc:56418
Orthologs(s)63 orthologs
Paralog(s)31 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
40.6
  • 40.6
  • 250
  • 287
  • 325
  • 491
  • 730
99.87
  • 99.87
  • 99.17
  • 99.04
  • 98.92
  • 98.36
  • 97.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
52.0
  • 52.0
99.83
  • 99.83
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
57.5
  • 57.5
  • 93.5
  • 308
  • 549
  • 936
99.81
  • 99.81
  • 99.69
  • 98.97
  • 98.17
  • 96.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
60.6
  • 60.6
99.80
  • 99.80
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • ZFS:0000049segmentation
132
  • 132
  • 212
  • 223
  • 252
  • 252
  • 313
  • 321
  • 324
  • 397
  • 411
  • 538
  • 697
  • 698
  • 1.22e3
  • 1.41e4
  • 1.42e4
  • 1.49e4
99.56
  • 99.56
  • 99.29
  • 99.26
  • 99.16
  • 99.16
  • 98.96
  • 98.93
  • 98.92
  • 98.67
  • 98.63
  • 98.20
  • 97.67
  • 97.67
  • 95.92
  • 52.86
  • 52.43
  • 49.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
172
  • 172
99.43
  • 99.43
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
185
  • 185
  • 209
  • 223
  • 283
  • 309
  • 321
  • 321
  • 358
  • 501
  • 1.29e3
99.38
  • 99.38
  • 99.30
  • 99.26
  • 99.06
  • 98.97
  • 98.93
  • 98.93
  • 98.80
  • 98.33
  • 95.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
204
  • 204
99.32
  • 99.32
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
233
  • 233
99.22
  • 99.22
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
234
  • 234
  • 833
99.22
  • 99.22
  • 97.21
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
238
  • 238
99.21
  • 99.21
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
278
  • 278
  • 1.30e3
  • 1.21e4
99.07
  • 99.07
  • 95.65
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
286
  • 286
99.05
  • 99.05
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
305
  • 305
  • 1.04e3
  • 1.45e4
98.98
  • 98.98
  • 96.52
  • 51.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
377
  • 377
98.74
  • 98.74
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
407
  • 407
98.64
  • 98.64
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
425
  • 425
98.58
  • 98.58
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
526
  • 526
98.24
  • 98.24
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
534
  • 534
  • 641
  • 1.14e3
98.22
  • 98.22
  • 97.86
  • 96.19
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
640
  • 640
97.86
  • 97.86
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
674
  • 674
97.75
  • 97.75
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
691
  • 691
97.69
  • 97.69
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
870
  • 870
97.09
  • 97.09
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
901
  • 901
  • 1.33e3
  • 1.36e3
  • 3.06e3
96.99
  • 96.99
  • 95.53
  • 95.45
  • 89.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
982
  • 982
96.71
  • 96.71
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.14e3
  • 1.14e3
96.19
  • 96.19
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.19e3
  • 1.19e3
96.02
  • 96.02
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.32e3
  • 1.32e3
95.59
  • 95.59
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.40e3
  • 1.40e3
95.30
  • 95.30
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.52e3
  • 1.52e3
94.92
  • 94.92
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
2.99e3
  • 2.99e3
90.00
  • 90.00
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.24e3
  • 3.24e3
89.15
  • 89.15
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
4.52e3
  • 4.52e3
  • 6.15e3
84.87
  • 84.87
  • 79.40
AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
6.50e3
  • 6.50e3
78.24
  • 78.24
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi3 species3 genesCompare expression
Bilateria10 species63 genesCompare expression

Orthology information comes from OMA : ENSDARG00000045248.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Otophysi4 genesCompare expression
Deuterostomia31 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000045248.

Cross-references

EnsemblENSDARG00000045248 (h3f3b.1)
ZFINZDB-GENE-050417-65 (h3f3b.1)
EMBLBC045982, BC049017, BC057444, BC071406, BC092854, BC152134, BC154269, BC165500, BX322798, BX323991, BX927323, CR382361, CU682604
Uniprot/SPTREMBLB2GSF5, B2GSF5_DANRE
Uniprot/SWISSPROTH33_DANRE, Q6PI20

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