D. rerio Gene: rdh12l - ENSDARG00000045277 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000045277
Namerdh12l
Descriptionretinol dehydrogenase 12, like [Source:ZFIN;Acc:ZDB-GENE-040801-48]
OrganismDanio rerio (zebrafish)
Synonym(s)im:6908424, zgc:100754
Paralog(s)37 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.26e3
  • 1.26e3
95.79
  • 95.79
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.40e3
  • 2.40e3
91.98
  • 91.98
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.55e3
  • 2.55e3
91.45
  • 91.45
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.19e3
  • 4.19e3
85.98
  • 85.98
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
4.29e3
  • 4.29e3
  • 9.50e3
85.64
  • 85.64
  • 68.18
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.49e3
  • 4.49e3
84.95
  • 84.95
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.44e3
  • 5.44e3
81.79
  • 81.79
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.70e3
  • 5.70e3
80.91
  • 80.91
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
6.13e3
  • 6.13e3
  • 1.42e4
79.48
  • 79.48
  • 52.41
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.57e3
  • 7.57e3
74.64
  • 74.64
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.81e3
  • 7.81e3
73.86
  • 73.86
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.96e3
  • 7.96e3
73.35
  • 73.35
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
8.65e3
  • 8.65e3
71.03
  • 71.03
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
8.70e3
  • 8.70e3
  • 9.25e3
  • 1.17e4
  • 1.20e4
  • 1.21e4
70.88
  • 70.88
  • 69.04
  • 60.96
  • 59.70
  • 59.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.78
  • 65.78
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0004707pharyngula stage
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
1.02e4
  • 1.02e4
  • 1.14e4
  • 1.22e4
  • 1.22e4
  • 1.22e4
  • 1.24e4
  • 1.24e4
  • 1.29e4
  • 1.29e4
  • 1.45e4
  • 1.64e4
  • 1.74e4
  • 1.78e4
  • 1.78e4
  • 1.79e4
  • 1.81e4
  • 1.83e4
  • 1.83e4
65.69
  • 65.69
  • 61.75
  • 59.08
  • 59.08
  • 59.08
  • 58.32
  • 58.32
  • 56.65
  • 56.65
  • 51.53
  • 45.07
  • 41.87
  • 40.52
  • 40.35
  • 40.18
  • 39.39
  • 38.62
  • 38.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
  • 1.18e4
64.15
  • 64.15
  • 60.50
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
1.09e4
  • 1.09e4
  • 1.30e4
  • 1.54e4
  • 1.68e4
63.41
  • 63.41
  • 56.59
  • 48.52
  • 43.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.09
  • 63.09
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.11e4
  • 1.11e4
62.83
  • 62.83
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.88
  • 56.88
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.44
  • 55.44
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.40e4
  • 1.40e4
  • 1.62e4
  • 1.78e4
53.03
  • 53.03
  • 45.92
  • 40.47
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.43e4
  • 1.43e4
52.02
  • 52.02
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
1.46e4
  • 1.46e4
  • 1.48e4
  • 1.59e4
  • 1.64e4
  • 1.66e4
  • 1.67e4
  • 1.78e4
51.14
  • 51.14
  • 50.40
  • 46.81
  • 45.21
  • 44.54
  • 44.18
  • 40.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.54e4
  • 1.54e4
  • 1.67e4
48.29
  • 48.29
  • 44.19
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression
Bilateria7 genesCompare expression
Opisthokonta16 genesCompare expression
Eukaryota37 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000045277.

Cross-references

EnsemblENSDARG00000045277 (rdh12l)
ZFINZDB-GENE-040801-48 (rdh12l)
Uniprot/SPTREMBLF1Q4M2, F1Q4M2_DANRE

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