D. rerio Gene: pabpn1 - ENSDARG00000045373 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000045373
Namepabpn1
Descriptionpoly(A) binding protein, nuclear 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2401]
OrganismDanio rerio (zebrafish)
Synonym(s)fb19c03, wu:fb17e03, wu:fb18c06, wu:fb19c03, zgc:85979, zgc:92452
Orthologs(s)14 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
555
  • 555
  • 870
98.14
  • 98.14
  • 97.09
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
579
  • 579
  • 587
  • 767
  • 792
  • 1.03e3
98.07
  • 98.07
  • 98.04
  • 97.43
  • 97.35
  • 96.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
660
  • 660
  • 1.45e4
97.79
  • 97.79
  • 51.33
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
715
  • 715
97.61
  • 97.61
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
749
  • 749
  • 1.06e3
97.49
  • 97.49
  • 96.46
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
756
  • 756
  • 1.29e3
97.47
  • 97.47
  • 95.67
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
915
  • 915
  • 1.52e3
96.94
  • 96.94
  • 94.90
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.03e3
  • 1.03e3
96.56
  • 96.56
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.05e3
  • 1.05e3
96.49
  • 96.49
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.08e3
  • 1.08e3
  • 1.85e3
96.40
  • 96.40
  • 93.82
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.10e3
  • 1.10e3
96.33
  • 96.33
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.16e3
  • 1.16e3
96.11
  • 96.11
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.19e3
  • 1.19e3
96.02
  • 96.02
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.20e3
  • 1.20e3
95.99
  • 95.99
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.23e3
  • 1.23e3
  • 1.46e4
95.87
  • 95.87
  • 51.07
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.25e3
  • 1.25e3
95.83
  • 95.83
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.25e3
  • 1.25e3
95.82
  • 95.82
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.29e3
  • 1.29e3
95.68
  • 95.68
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.44e3
  • 1.44e3
95.19
  • 95.19
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.51e3
  • 1.51e3
94.96
  • 94.96
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.58e3
  • 1.58e3
94.71
  • 94.71
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.95e3
  • 1.95e3
93.47
  • 93.47
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.13e3
  • 2.13e3
92.88
  • 92.88
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000104life cycle
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000049segmentation
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.55e3
  • 2.55e3
  • 4.98e3
  • 5.94e3
  • 6.29e3
  • 6.54e3
  • 6.64e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.97e3
  • 6.97e3
  • 7.03e3
  • 7.03e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 7.92e3
  • 8.96e3
  • 8.96e3
  • 9.17e3
  • 9.34e3
  • 1.25e4
  • 1.42e4
91.46
  • 91.46
  • 83.33
  • 80.12
  • 78.95
  • 78.12
  • 77.77
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.66
  • 76.66
  • 76.46
  • 76.46
  • 74.99
  • 74.99
  • 74.99
  • 74.99
  • 73.52
  • 73.49
  • 69.99
  • 69.99
  • 69.30
  • 68.72
  • 57.99
  • 52.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.83e3
  • 2.83e3
90.53
  • 90.53
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.85e3
  • 2.85e3
90.46
  • 90.46
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.94e3
  • 2.94e3
90.16
  • 90.16
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
  • 1.50e4
63.08
  • 63.08
  • 49.94
AEIR
  • AEIR
  • AEIR
UBERON:0001997olfactory epithelium
  • UBERON:0000104life cycle
1.33e4
  • 1.33e4
55.38
  • 55.38
AEIR
  • AEIR
UBERON:0008897fin
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
  • 1.50e4
49.94
  • 49.94
  • 49.91
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Cross-references

Do not show this banner again