D. rerio Gene: stard3nl - ENSDARG00000045421 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000045421
Namestard3nl
DescriptionSTARD3 N-terminal like [Source:ZFIN;Acc:ZDB-GENE-040718-4]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fa01c03, zgc:86628

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
1.56e3
  • 1.56e3
  • 2.22e3
  • 2.56e3
  • 2.60e3
  • 2.71e3
  • 6.23e3
94.79
  • 94.79
  • 92.58
  • 91.42
  • 91.31
  • 90.94
  • 79.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.05e3
  • 3.05e3
89.78
  • 89.78
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
3.94e3
  • 3.94e3
  • 6.97e3
  • 8.85e3
  • 1.18e4
  • 1.18e4
86.81
  • 86.81
  • 76.66
  • 70.36
  • 60.50
  • 60.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.60e3
  • 4.60e3
84.60
  • 84.60
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.06e3
  • 5.06e3
83.06
  • 83.06
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
5.57e3
  • 5.57e3
  • 1.19e4
81.35
  • 81.35
  • 60.15
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.12e3
  • 6.12e3
79.52
  • 79.52
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000106zygote stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
6.49e3
  • 6.49e3
  • 6.87e3
  • 7.19e3
  • 7.71e3
  • 1.01e4
  • 1.25e4
  • 1.31e4
  • 1.32e4
  • 1.37e4
  • 1.38e4
  • 1.39e4
  • 1.41e4
  • 1.41e4
  • 1.42e4
78.28
  • 78.28
  • 77.01
  • 75.92
  • 74.19
  • 66.19
  • 58.16
  • 56.19
  • 55.80
  • 54.05
  • 53.87
  • 53.62
  • 52.65
  • 52.64
  • 52.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.59e3
  • 6.59e3
77.94
  • 77.94
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.74e3
  • 6.74e3
77.45
  • 77.45
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.88e3
  • 6.88e3
76.98
  • 76.98
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
6.95e3
  • 6.95e3
  • 9.60e3
76.71
  • 76.71
  • 67.85
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
6.99e3
  • 6.99e3
  • 9.30e3
76.59
  • 76.59
  • 68.85
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.20e3
  • 7.20e3
75.88
  • 75.88
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.27e3
  • 7.27e3
75.65
  • 75.65
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.51e3
  • 7.51e3
74.85
  • 74.85
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.10e3
  • 8.10e3
72.89
  • 72.89
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
8.18e3
  • 8.18e3
  • 8.83e3
  • 1.06e4
  • 1.06e4
  • 1.06e4
  • 1.12e4
  • 1.16e4
  • 1.18e4
  • 1.24e4
  • 1.47e4
72.61
  • 72.61
  • 70.43
  • 64.64
  • 64.45
  • 64.45
  • 62.60
  • 61.02
  • 60.34
  • 58.46
  • 50.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.66e3
  • 8.66e3
71.02
  • 71.02
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.72e3
  • 8.72e3
70.80
  • 70.80
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.05e3
  • 9.05e3
69.71
  • 69.71
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
9.07e3
  • 9.07e3
  • 1.10e4
69.63
  • 69.63
  • 63.10
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.38e3
  • 9.38e3
68.60
  • 68.60
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
9.93e3
  • 9.93e3
66.76
  • 66.76
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.00e4
  • 1.00e4
  • 1.02e4
  • 1.07e4
66.46
  • 66.46
  • 65.89
  • 64.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.07e4
  • 1.07e4
64.11
  • 64.11
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
1.10e4
  • 1.10e4
  • 1.10e4
  • 1.11e4
  • 1.15e4
63.18
  • 63.18
  • 63.14
  • 62.72
  • 61.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.22e4
  • 1.22e4
59.25
  • 59.25
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBX323064
EnsemblENSDARG00000045421 (stard3nl)
Uniprot/SPTREMBLF1RE09, F1RE09_DANRE
ZFINZDB-GENE-040718-4 (stard3nl)

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