D. rerio Gene: taf3 - ENSDARG00000045513 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000045513
Nametaf3
DescriptionTAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto [Source:ZFIN;Acc:ZDB-GENE-030131-6406]
OrganismDanio rerio (zebrafish)
Synonym(s)fi76b06, wu:fi76b06, zgc:136280
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.44e3
  • 1.44e3
  • 2.26e3
  • 3.38e3
  • 6.99e3
95.17
  • 95.17
  • 92.44
  • 88.68
  • 76.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.54e3
  • 1.54e3
94.84
  • 94.84
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.89e3
  • 1.89e3
93.67
  • 93.67
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.03e3
  • 2.03e3
93.21
  • 93.21
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
2.45e3
  • 2.45e3
  • 2.96e3
  • 3.37e3
  • 3.86e3
  • 4.19e3
  • 4.64e3
  • 4.68e3
  • 4.84e3
  • 4.92e3
  • 6.65e3
91.81
  • 91.81
  • 90.08
  • 88.71
  • 87.09
  • 85.96
  • 84.47
  • 84.32
  • 83.80
  • 83.53
  • 77.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.48e3
  • 2.48e3
91.69
  • 91.69
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
2.76e3
  • 2.76e3
  • 2.87e3
  • 3.01e3
  • 3.04e3
  • 3.22e3
  • 3.27e3
  • 3.46e3
  • 3.81e3
  • 3.83e3
  • 3.85e3
  • 4.14e3
  • 4.44e3
  • 4.84e3
  • 5.65e3
90.76
  • 90.76
  • 90.40
  • 89.94
  • 89.83
  • 89.20
  • 89.04
  • 88.42
  • 87.23
  • 87.17
  • 87.12
  • 86.13
  • 85.13
  • 83.81
  • 81.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
2.77e3
  • 2.77e3
  • 2.84e3
  • 3.08e3
  • 3.33e3
  • 4.28e3
  • 4.79e3
90.74
  • 90.74
  • 90.51
  • 89.68
  • 88.85
  • 85.68
  • 83.96
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
3.10e3
  • 3.10e3
89.63
  • 89.63
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
3.43e3
  • 3.43e3
  • 3.96e3
88.53
  • 88.53
  • 86.73
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
3.45e3
  • 3.45e3
  • 3.72e3
  • 5.64e3
  • 5.86e3
  • 6.06e3
88.45
  • 88.45
  • 87.55
  • 81.13
  • 80.37
  • 79.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
3.54e3
  • 3.54e3
88.16
  • 88.16
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
3.61e3
  • 3.61e3
  • 6.26e3
87.91
  • 87.91
  • 79.04
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
3.63e3
  • 3.63e3
  • 5.08e3
  • 5.59e3
87.86
  • 87.86
  • 83.00
  • 81.30
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.87e3
  • 3.87e3
87.06
  • 87.06
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.24e3
  • 4.24e3
  • 8.37e3
85.81
  • 85.81
  • 71.99
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.25e3
  • 4.25e3
85.77
  • 85.77
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
4.29e3
  • 4.29e3
85.64
  • 85.64
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
4.92e3
  • 4.92e3
83.51
  • 83.51
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.02e3
  • 5.02e3
83.18
  • 83.18
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
5.15e3
  • 5.15e3
82.74
  • 82.74
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
5.19e3
  • 5.19e3
  • 5.50e3
82.61
  • 82.61
  • 81.58
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.21e3
  • 6.21e3
79.22
  • 79.22
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.53e3
  • 6.53e3
78.14
  • 78.14
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.63e3
  • 6.63e3
77.79
  • 77.79
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.82e3
  • 6.82e3
77.16
  • 77.16
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.33e3
  • 7.33e3
75.45
  • 75.45
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
7.50e3
  • 7.50e3
74.89
  • 74.89
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.86e3
  • 7.86e3
73.68
  • 73.68
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.94e3
  • 7.94e3
73.40
  • 73.40
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.09e3
  • 9.09e3
69.57
  • 69.57
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000045513 (taf3)
ZFINZDB-GENE-030131-6406 (taf3)
EMBLBX640594, BX927352
Uniprot/SPTREMBLQ5RH27, Q5RH27_DANRE

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