D. rerio Gene: atp5c1 - ENSDARG00000045514 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000045514
Nameatp5c1
DescriptionATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8901]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fk34c05, zgc:73209

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
149
  • 149
99.51
  • 99.51
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
203
  • 203
99.32
  • 99.32
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
206
  • 206
99.31
  • 99.31
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
207
  • 207
  • 1.01e3
  • 1.15e4
99.31
  • 99.31
  • 96.61
  • 61.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
231
  • 231
99.23
  • 99.23
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
255
  • 255
  • 354
  • 578
  • 579
99.15
  • 99.15
  • 98.82
  • 98.07
  • 98.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
290
  • 290
99.03
  • 99.03
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
296
  • 296
  • 311
  • 350
  • 452
  • 472
  • 608
  • 608
  • 793
  • 935
  • 999
99.01
  • 99.01
  • 98.96
  • 98.83
  • 98.49
  • 98.42
  • 97.97
  • 97.97
  • 97.35
  • 96.87
  • 96.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
321
  • 321
98.93
  • 98.93
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
327
  • 327
  • 454
  • 472
98.91
  • 98.91
  • 98.48
  • 98.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
330
  • 330
98.90
  • 98.90
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
337
  • 337
98.87
  • 98.87
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
338
  • 338
  • 462
98.87
  • 98.87
  • 98.46
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
340
  • 340
98.86
  • 98.86
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
350
  • 350
98.83
  • 98.83
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
363
  • 363
98.79
  • 98.79
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
405
  • 405
  • 530
  • 1.15e3
  • 2.11e3
  • 2.92e3
98.65
  • 98.65
  • 98.23
  • 96.16
  • 92.93
  • 90.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000106zygote stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000068embryo stage
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
  • ZFS:0000049segmentation
  • UBERON:0000104life cycle
440
  • 440
  • 461
  • 512
  • 535
  • 574
  • 577
  • 622
  • 888
  • 1.22e3
  • 1.51e3
  • 1.99e3
  • 2.07e3
  • 2.16e3
  • 3.40e3
  • 8.34e3
  • 1.16e4
  • 1.45e4
  • 1.45e4
  • 1.50e4
98.53
  • 98.53
  • 98.46
  • 98.29
  • 98.21
  • 98.08
  • 98.07
  • 97.92
  • 97.03
  • 95.91
  • 94.96
  • 93.34
  • 93.07
  • 92.76
  • 88.62
  • 72.07
  • 61.10
  • 51.56
  • 51.51
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
441
  • 441
98.53
  • 98.53
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
481
  • 481
  • 1.06e3
  • 9.97e3
98.39
  • 98.39
  • 96.47
  • 66.63
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
484
  • 484
98.38
  • 98.38
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
485
  • 485
98.38
  • 98.38
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
518
  • 518
98.27
  • 98.27
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
593
  • 593
98.02
  • 98.02
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
596
  • 596
98.01
  • 98.01
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
689
  • 689
97.70
  • 97.70
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
699
  • 699
97.66
  • 97.66
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
780
  • 780
97.39
  • 97.39
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
856
  • 856
  • 908
97.14
  • 97.14
  • 96.96
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
915
  • 915
96.94
  • 96.94
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
971
  • 971
  • 1.86e3
  • 2.74e3
  • 2.99e3
  • 3.76e3
  • 4.02e3
96.75
  • 96.75
  • 93.77
  • 90.81
  • 89.98
  • 87.42
  • 86.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
989
  • 989
96.69
  • 96.69
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.57e3
  • 1.57e3
94.76
  • 94.76
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.87e3
  • 3.87e3
87.05
  • 87.05
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
6.10e3
  • 6.10e3
  • 1.26e4
79.56
  • 79.56
  • 57.84
AEIR
  • AEIR
  • AEIR
UBERON:0001997olfactory epithelium
  • UBERON:0000104life cycle
1.10e4
  • 1.10e4
63.21
  • 63.21
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.43
  • 50.43
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

EMBLBX640594
EnsemblENSDARG00000045514 (atp5c1)
Uniprot/SPTREMBLQ5RH26, Q5RH26_DANRE
ZFINZDB-GENE-030131-8901 (atp5c1)

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