D. rerio Gene: fgd6 - ENSDARG00000045528 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000045528
Namefgd6
DescriptionFYVE, RhoGEF and PH domain containing 6 [Source:ZFIN;Acc:ZDB-GENE-041210-200]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-183c16.1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.49e3
  • 5.49e3
81.61
  • 81.61
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.41e3
  • 6.41e3
78.54
  • 78.54
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.88e3
  • 6.88e3
76.98
  • 76.98
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
7.42e3
  • 7.42e3
  • 9.48e3
75.17
  • 75.17
  • 68.27
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
7.85e3
  • 7.85e3
  • 9.22e3
73.72
  • 73.72
  • 69.13
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.05e4
  • 1.05e4
  • 1.10e4
  • 1.17e4
  • 1.33e4
  • 1.68e4
64.81
  • 64.81
  • 63.26
  • 60.98
  • 55.62
  • 43.89
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.68
  • 63.68
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.25
  • 62.25
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.59
  • 61.59
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.22e4
  • 1.22e4
59.27
  • 59.27
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
  • 1.30e4
58.36
  • 58.36
  • 56.45
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.01
  • 57.01
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.67
  • 56.67
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.88
  • 55.88
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.36e4
  • 1.36e4
  • 1.79e4
54.55
  • 54.55
  • 40.18
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
52.31
  • 52.31
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.19
  • 52.19
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.77
  • 51.77
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.75
  • 51.75
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.67
  • 51.67
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.58
  • 50.58
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
49.12
  • 49.12
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.69e4
  • 1.69e4
  • 1.69e4
43.56
  • 43.56
  • 43.49
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.37
  • 41.37
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLBX640593, CT573048
EnsemblENSDARG00000045528 (fgd6)
Uniprot/SPTREMBLQ5RH33, Q5RH33_DANRE
ZFINZDB-GENE-041210-200 (fgd6)

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