D. rerio Gene: nfybb - ENSDARG00000045611 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000045611
Namenfybb
Descriptionnuclear transcription factor Y, beta b [Source:ZFIN;Acc:ZDB-GENE-050306-25]
OrganismDanio rerio (zebrafish)
Synonym(s)nfyb, zgc:110533

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.48e3
  • 3.48e3
88.37
  • 88.37
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000029Pharyngula:Prim-5
3.85e3
  • 3.85e3
  • 5.47e3
  • 1.12e4
87.11
  • 87.11
  • 81.70
  • 62.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:00072334 cell stage
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
  • UBERON:0000106zygote stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
4.07e3
  • 4.07e3
  • 4.98e3
  • 6.54e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.97e3
  • 7.03e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 8.96e3
  • 8.96e3
  • 1.10e4
  • 1.12e4
  • 1.14e4
  • 1.21e4
  • 1.23e4
  • 1.24e4
  • 1.26e4
  • 1.26e4
  • 1.28e4
  • 1.31e4
  • 1.32e4
  • 1.33e4
  • 1.34e4
  • 1.34e4
86.36
  • 86.36
  • 83.33
  • 78.12
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.66
  • 76.46
  • 74.99
  • 74.99
  • 73.52
  • 69.99
  • 69.99
  • 63.29
  • 62.53
  • 62.00
  • 59.40
  • 58.89
  • 58.35
  • 57.96
  • 57.66
  • 57.18
  • 56.25
  • 55.79
  • 55.49
  • 55.25
  • 55.19
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
4.39e3
  • 4.39e3
  • 5.05e3
85.30
  • 85.30
  • 83.09
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.85e3
  • 4.85e3
83.78
  • 83.78
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.86e3
  • 4.86e3
83.75
  • 83.75
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.97e3
  • 4.97e3
83.35
  • 83.35
AEIR
  • AEIR
UBERON:0004752palatoquadrate cartilage
  • ZFS:0000039Larval:Days 7-13
  • ZFS:0000036Larval:Day 4
4.98e3
  • 4.98e3
  • 9.96e3
83.34
  • 83.34
  • 66.67
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
5.14e3
  • 5.14e3
82.79
  • 82.79
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.38e3
  • 5.38e3
81.98
  • 81.98
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.41e3
  • 5.41e3
81.90
  • 81.90
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
5.56e3
  • 5.56e3
  • 6.95e3
  • 7.20e3
  • 8.92e3
  • 9.56e3
  • 1.13e4
  • 1.31e4
  • 1.47e4
  • 1.78e4
81.38
  • 81.38
  • 76.74
  • 75.88
  • 70.15
  • 68.00
  • 62.28
  • 56.02
  • 50.94
  • 40.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.33e3
  • 6.33e3
78.81
  • 78.81
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.40e3
  • 6.40e3
78.57
  • 78.57
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.56e3
  • 6.56e3
78.05
  • 78.05
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.58e3
  • 6.58e3
77.96
  • 77.96
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
6.59e3
  • 6.59e3
  • 8.54e3
  • 1.06e4
  • 1.07e4
  • 1.28e4
  • 1.38e4
77.94
  • 77.94
  • 71.42
  • 64.43
  • 64.20
  • 57.14
  • 53.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.69e3
  • 6.69e3
77.59
  • 77.59
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
6.82e3
  • 6.82e3
  • 7.49e3
  • 1.21e4
  • 1.26e4
  • 1.31e4
77.17
  • 77.17
  • 74.93
  • 59.42
  • 57.68
  • 56.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.01e3
  • 7.01e3
76.52
  • 76.52
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
7.34e3
  • 7.34e3
  • 1.32e4
75.44
  • 75.44
  • 55.88
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
7.71e3
  • 7.71e3
  • 8.25e3
  • 8.74e3
  • 9.88e3
74.19
  • 74.19
  • 72.37
  • 70.72
  • 66.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
7.82e3
  • 7.82e3
  • 1.20e4
  • 1.45e4
73.83
  • 73.83
  • 59.84
  • 51.57
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.63e3
  • 8.63e3
71.11
  • 71.11
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.63e3
  • 8.63e3
71.10
  • 71.10
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.68e3
  • 9.68e3
67.59
  • 67.59
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
9.86e3
  • 9.86e3
66.98
  • 66.98
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000036Larval:Day 4
  • ZFS:0000039Larval:Days 7-13
9.96e3
  • 9.96e3
  • 1.49e4
66.67
  • 66.67
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.10e4
  • 1.10e4
63.30
  • 63.30
AEIR
  • AEIR
UBERON:0011610ceratohyal cartilage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000039Larval:Days 7-13
1.12e4
  • 1.12e4
  • 1.49e4
62.50
  • 62.50
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.12e4
  • 1.12e4
62.37
  • 62.37
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.17e4
  • 1.17e4
60.95
  • 60.95
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.19e4
  • 1.19e4
  • 1.23e4
60.31
  • 60.31
  • 58.90
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
1.24e4
  • 1.24e4
  • 1.37e4
  • 1.39e4
58.52
  • 58.52
  • 54.13
  • 53.41
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000039Larval:Days 7-13
1.24e4
  • 1.24e4
  • 1.28e4
  • 1.49e4
58.33
  • 58.33
  • 57.11
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000026Segmentation:14-19 somites
1.33e4
  • 1.33e4
55.53
  • 55.53
AEIR
  • AEIR
UBERON:0003107Meckel's cartilage
  • ZFS:0000039Larval:Days 7-13
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:2001516ceratobranchial cartilage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000039Larval:Days 7-13
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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