D. rerio Gene: elavl4 - ENSDARG00000045639 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000045639
Nameelavl4
DescriptionELAV like neuron-specific RNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-990415-246]
OrganismDanio rerio (zebrafish)
Synonym(s)elav-related d, elrd, hud, wu:fc24h01, zhud
Orthologs(s)19 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
519
  • 519
  • 6.38e3
  • 9.51e3
  • 1.19e4
98.26
  • 98.26
  • 78.65
  • 68.17
  • 59.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
585
  • 585
  • 2.43e3
98.04
  • 98.04
  • 91.86
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
812
  • 812
  • 1.35e3
  • 1.68e3
  • 2.35e3
  • 5.70e3
  • 5.87e3
  • 7.79e3
  • 1.03e4
  • 1.50e4
97.29
  • 97.29
  • 95.49
  • 94.39
  • 92.13
  • 80.91
  • 80.34
  • 73.92
  • 65.61
  • 49.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
813
  • 813
  • 1.15e3
  • 3.69e3
  • 6.13e3
  • 8.08e3
  • 8.17e3
  • 8.94e3
  • 1.44e4
  • 1.45e4
97.28
  • 97.28
  • 96.14
  • 87.63
  • 79.47
  • 72.96
  • 72.66
  • 70.08
  • 51.83
  • 51.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.09e3
  • 1.09e3
  • 8.61e3
  • 1.00e4
96.35
  • 96.35
  • 71.18
  • 66.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.57e3
  • 1.57e3
  • 1.71e3
  • 2.18e3
94.76
  • 94.76
  • 94.29
  • 92.70
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.06e3
  • 3.06e3
89.76
  • 89.76
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
5.27e3
  • 5.27e3
  • 6.97e3
  • 7.08e3
  • 7.47e3
  • 8.79e3
  • 9.19e3
  • 1.17e4
  • 1.28e4
  • 1.31e4
82.35
  • 82.35
  • 76.66
  • 76.30
  • 74.99
  • 70.57
  • 69.22
  • 60.70
  • 57.13
  • 56.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.38e3
  • 5.38e3
81.99
  • 81.99
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000026Segmentation:14-19 somites
5.98e3
  • 5.98e3
79.99
  • 79.99
AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.40e3
  • 8.40e3
  • 8.96e3
  • 8.96e3
  • 9.96e3
  • 1.07e4
  • 1.17e4
  • 1.17e4
71.86
  • 71.86
  • 69.99
  • 69.99
  • 66.66
  • 64.27
  • 60.70
  • 60.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003070trigeminal placode complex
  • ZFS:0000026Segmentation:14-19 somites
8.54e3
  • 8.54e3
71.42
  • 71.42
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.93e3
  • 8.93e3
70.11
  • 70.11
AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
9.51e3
  • 9.51e3
  • 1.05e4
  • 1.05e4
  • 1.17e4
  • 1.20e4
  • 1.21e4
  • 1.21e4
  • 1.38e4
68.16
  • 68.16
  • 64.98
  • 64.98
  • 60.70
  • 59.98
  • 59.36
  • 59.36
  • 53.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001675trigeminal ganglion
  • ZFS:0000027Segmentation:20-25 somites
1.09e4
  • 1.09e4
63.63
  • 63.63
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.44
  • 60.44
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.26e4
  • 1.26e4
57.86
  • 57.86
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.35
  • 57.35
AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
56.22
  • 56.22
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.14
  • 56.14
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
  • 1.61e4
54.74
  • 54.74
  • 46.03
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.93
  • 50.93
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.53e4
  • 1.53e4
48.70
  • 48.70
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.63e4
  • 1.63e4
45.53
  • 45.53
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.51
  • 41.51
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
41.17
  • 41.17
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.81
  • 40.81
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.82e4
  • 1.82e4
38.90
  • 38.90
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.96e4
  • 1.96e4
34.25
  • 34.25
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria19 species19 genesCompare expression

Orthology information comes from OMA : ENSDARG00000045639.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression
Chordata4 genesCompare expression
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000045639.

Cross-references

EnsemblENSDARG00000045639 (elavl4)
ZFINZDB-GENE-990415-246 (elavl4)
EMBLCR931780, CU467068, CU929301
Uniprot/SPTREMBLA9C3U8, A9C3U8_DANRE, F1QGR7, F1QGR7_DANRE, F1R133, F1R133_DANRE

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