D. rerio Gene: opn1sw1 - ENSDARG00000045677 - Danio rerio (zebrafish)

Gene Information

Ensembl IDENSDARG00000045677
Nameopn1sw1
Descriptionopsin 1 (cone pigments), short-wave-sensitive 1 [Source:ZFIN;Acc:ZDB-GENE-991109-25]
OrganismDanio rerio (zebrafish)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreSources
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
26.7
  • 26.7
  • 737
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
71.3
  • 71.3
  • 139
  • 143
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000014Blastula:Sphere
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0000106zygote stage
73.8
  • 73.8
  • 224
  • 513
  • 1.48e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 7.40e3
  • 8.88e3
  • 1.29e4
  • 1.37e4
  • 1.47e4
  • 1.79e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
121
  • 121
  • 1.66e4
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000032Pharyngula:High-pec
452
  • 452
  • 7.40e3
  • 9.11e3
  • 1.10e4
  • 1.18e4
  • 1.33e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
2.34e3
  • 2.34e3
  • 5.92e3
  • 9.36e3
  • 1.27e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001787photoreceptor layer of retina
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
4.93e3
  • 4.93e3
  • 7.40e3
  • 7.40e3
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000573retinal cone cell
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
7.40e3
  • 7.40e3
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
1.30e4
  • 1.30e4
AEIR
  • AEIR
CL:0000494UV sensitive photoreceptor cell
  • ZFS:0000035Larval:Protruding-mouth
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.08e4
  • 2.08e4
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.
Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data: