D. rerio Gene: opn1sw1 - ENSDARG00000045677 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000045677
Nameopn1sw1
Descriptionopsin 1 (cone pigments), short-wave-sensitive 1 [Source:ZFIN;Acc:ZDB-GENE-991109-25]
OrganismDanio rerio (zebrafish)
Synonym(s)opn1sw2, sws1, uvops, zfuv
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000032Pharyngula:High-pec
9.70
  • 9.70
  • 455
  • 7.47e3
  • 1.10e4
  • 1.20e4
  • 1.34e4
99.97
  • 99.97
  • 98.48
  • 75.00
  • 63.04
  • 59.98
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0000106zygote stage
  • ZFS:0000033Hatching:Long-pec
74.4
  • 74.4
  • 225
  • 516
  • 1.49e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 7.47e3
  • 8.96e3
  • 1.12e4
  • 1.19e4
  • 1.30e4
  • 1.38e4
  • 1.49e4
  • 1.80e4
  • 1.81e4
99.75
  • 99.75
  • 99.25
  • 98.27
  • 95.00
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 74.99
  • 69.99
  • 62.49
  • 59.99
  • 56.36
  • 53.85
  • 50.20
  • 39.75
  • 39.39
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
117
  • 117
  • 144
  • 8.67e3
99.61
  • 99.61
  • 99.52
  • 70.97
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
121
  • 121
  • 1.66e4
99.60
  • 99.60
  • 44.39
AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
2.36e3
  • 2.36e3
  • 5.97e3
  • 9.44e3
  • 1.28e4
92.10
  • 92.10
  • 80.00
  • 68.38
  • 57.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001787photoreceptor layer of retina
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
4.98e3
  • 4.98e3
  • 7.47e3
  • 7.47e3
83.34
  • 83.34
  • 75.00
  • 75.00
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000573retinal cone cell
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.75
  • 56.75
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
1.31e4
  • 1.31e4
56.06
  • 56.06
AEIR
  • AEIR
CL:0000494UV sensitive photoreceptor cell
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.08e4
  • 2.08e4
30.39
  • 30.39
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000045677 (opn1sw1)
ZFINZDB-GENE-991109-25 (opn1sw1)
EMBLBC060894, BC153466, BX465210
Uniprot/SPTREMBLQ6P981, Q6P981_DANRE

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