D. rerio Gene: cntn1b - ENSDARG00000045685 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000045685
Namecntn1b
Descriptioncontactin 1b [Source:ZFIN;Acc:ZDB-GENE-041210-236]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-240a12.2

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
2.39e3
  • 2.39e3
  • 1.67e4
92.01
  • 92.01
  • 44.02
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
4.41e3
  • 4.41e3
  • 6.15e3
  • 1.03e4
85.24
  • 85.24
  • 79.42
  • 65.39
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
8.30e3
  • 8.30e3
  • 1.25e4
  • 1.26e4
  • 1.49e4
  • 1.50e4
  • 1.72e4
  • 1.79e4
  • 1.80e4
  • 1.81e4
72.20
  • 72.20
  • 58.06
  • 57.79
  • 50.25
  • 49.92
  • 42.44
  • 40.18
  • 39.85
  • 39.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
8.55e3
  • 8.55e3
  • 1.24e4
  • 1.56e4
  • 1.89e4
  • 1.97e4
  • 2.03e4
71.37
  • 71.37
  • 58.44
  • 47.61
  • 36.59
  • 33.92
  • 32.06
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.05e4
  • 1.05e4
  • 1.10e4
  • 1.39e4
65.00
  • 65.00
  • 63.25
  • 53.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.12
  • 62.12
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000037Larval:Day 5
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000032Pharyngula:High-pec
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
  • 1.39e4
  • 1.50e4
55.16
  • 55.16
  • 53.55
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000030Pharyngula:Prim-15
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
CL:0000246Mauthner neuron
  • ZFS:0000032Pharyngula:High-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002827vestibulocochlear ganglion
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
49.20
  • 49.20
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.85e4
  • 1.85e4
37.89
  • 37.89
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.64
  • 36.64
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.19e4
  • 2.19e4
26.54
  • 26.54
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.27e4
  • 2.27e4
23.86
  • 23.86
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBX897729
EnsemblENSDARG00000045685 (cntn1b)
Uniprot/SPTREMBLF1R1C8, F1R1C8_DANRE, Q5TYT0, Q5TYT0_DANRE
ZFINZDB-GENE-041210-236 (cntn1b)

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