D. rerio Gene: hapln3 - ENSDARG00000045802 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000045802
Namehapln3
Descriptionhyaluronan and proteoglycan link protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2089]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:85609

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.12e3
  • 7.12e3
76.15
  • 76.15
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
7.37e3
  • 7.37e3
  • 9.07e3
  • 1.08e4
  • 1.15e4
  • 1.56e4
75.33
  • 75.33
  • 69.64
  • 63.77
  • 61.52
  • 47.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003058hypochord
  • ZFS:0000026Segmentation:14-19 somites
7.47e3
  • 7.47e3
74.99
  • 74.99
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
7.75e3
  • 7.75e3
  • 1.15e4
  • 1.16e4
74.06
  • 74.06
  • 61.51
  • 61.03
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
7.77e3
  • 7.77e3
  • 9.17e3
73.97
  • 73.97
  • 69.31
AEIR
  • AEIR
  • AEIR
UBERON:0004535cardiovascular system
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
7.97e3
  • 7.97e3
  • 8.54e3
  • 8.54e3
73.32
  • 73.32
  • 71.42
  • 71.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001638vein
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
8.04e3
  • 8.04e3
  • 8.04e3
  • 8.96e3
73.07
  • 73.07
  • 73.07
  • 69.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.12e3
  • 8.12e3
72.81
  • 72.81
AEIR
  • AEIR
UBERON:2000040median fin fold
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.30e3
  • 8.30e3
  • 9.19e3
  • 9.33e3
  • 9.96e3
  • 9.96e3
  • 1.16e4
  • 1.16e4
72.22
  • 72.22
  • 69.22
  • 68.74
  • 66.66
  • 66.66
  • 61.10
  • 61.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2005316fin fold pectoral fin bud
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.71e3
  • 8.71e3
  • 9.51e3
70.82
  • 70.82
  • 68.17
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.15e3
  • 9.15e3
69.37
  • 69.37
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.35e3
  • 9.35e3
68.68
  • 68.68
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.45e3
  • 9.45e3
68.36
  • 68.36
AEIR
  • AEIR
UBERON:0005421pectoral appendage apical ectodermal ridge
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
9.51e3
  • 9.51e3
  • 9.51e3
  • 9.96e3
  • 1.05e4
68.17
  • 68.17
  • 68.17
  • 66.66
  • 64.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
9.71e3
  • 9.71e3
  • 1.02e4
  • 1.34e4
67.48
  • 67.48
  • 65.89
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000104life cycle
9.96e3
  • 9.96e3
  • 1.14e4
  • 1.50e4
66.65
  • 66.65
  • 61.70
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.14e4
  • 1.14e4
  • 1.56e4
61.87
  • 61.87
  • 47.91
AEIR
  • AEIR
  • AEIR
UBERON:0001840semicircular canal
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
1.19e4
  • 1.19e4
  • 1.49e4
  • 1.49e4
60.00
  • 60.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000033Hatching:Long-pec
1.21e4
  • 1.21e4
59.36
  • 59.36
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.03
  • 58.03
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
1.34e4
  • 1.34e4
55.24
  • 55.24
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.36
  • 54.36
AEIR
  • AEIR
UBERON:0002538hatching gland
  • ZFS:0000029Pharyngula:Prim-5
1.38e4
  • 1.38e4
53.83
  • 53.83
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
52.48
  • 52.48
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.81
  • 51.81
AEIR
  • AEIR
UBERON:0002200vasculature of head
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2002215otic vesicle protrusion
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0014907intersomitic vessel
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0005805dorsal aorta
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001555digestive tract
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.90
  • 49.90
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.79
  • 49.79
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.90
  • 46.90
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.21
  • 43.21
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.29
  • 42.29
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.76e4
  • 1.76e4
40.91
  • 40.91
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
1.79e4
  • 1.79e4
40.14
  • 40.14
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBX294110
EnsemblENSDARG00000045802 (hapln3)
Uniprot/SPTREMBLF1QVB2, F1QVB2_DANRE
ZFINZDB-GENE-040426-2089 (hapln3)

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