D. rerio Gene: rlbp1b - ENSDARG00000045808 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000045808
Namerlbp1b
Descriptionretinaldehyde binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1870]
OrganismDanio rerio (zebrafish)
Synonym(s)cralbpa, cralbpb, rlbp1, rlbp1a, zgc:77766

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.09e3
  • 1.09e3
  • 1.62e3
96.35
  • 96.35
  • 94.58
AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • ZFS:0000039Larval:Days 7-13
1.38e3
  • 1.38e3
  • 1.07e4
  • 1.49e4
95.40
  • 95.40
  • 64.28
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.63e3
  • 1.63e3
94.55
  • 94.55
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
2.11e3
  • 2.11e3
  • 6.38e3
  • 1.58e4
  • 1.73e4
  • 1.74e4
92.95
  • 92.95
  • 78.65
  • 46.96
  • 42.01
  • 41.78
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
2.31e3
  • 2.31e3
  • 9.43e3
92.27
  • 92.27
  • 68.41
AEIR
  • AEIR
  • AEIR
UBERON:0001782pigmented layer of retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
4.98e3
  • 4.98e3
  • 5.60e3
  • 6.40e3
  • 6.40e3
  • 6.64e3
83.34
  • 83.34
  • 81.25
  • 78.57
  • 78.57
  • 77.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000028Segmentation:26+ somites
4.98e3
  • 4.98e3
  • 7.47e3
  • 7.47e3
  • 8.79e3
  • 8.96e3
  • 8.96e3
  • 9.34e3
  • 9.44e3
83.34
  • 83.34
  • 74.99
  • 74.99
  • 70.57
  • 69.98
  • 69.98
  • 68.74
  • 68.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0008904neuromast
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
5.34e3
  • 5.34e3
  • 6.22e3
82.14
  • 82.14
  • 79.16
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
5.69e3
  • 5.69e3
  • 6.50e3
  • 6.72e3
  • 6.79e3
  • 1.28e4
80.94
  • 80.94
  • 78.25
  • 77.49
  • 77.26
  • 57.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
5.77e3
  • 5.77e3
80.67
  • 80.67
AEIR
  • AEIR
UBERON:0002540lateral line system
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
6.22e3
  • 6.22e3
  • 6.22e3
  • 6.40e3
79.16
  • 79.16
  • 79.16
  • 78.57
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
8.22e3
  • 8.22e3
  • 8.65e3
  • 8.83e3
  • 8.96e3
  • 9.75e3
  • 1.05e4
  • 1.07e4
72.48
  • 72.48
  • 71.04
  • 70.44
  • 69.98
  • 67.37
  • 64.97
  • 64.26
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000037Larval:Day 5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
8.53e3
  • 8.53e3
  • 8.96e3
  • 9.44e3
  • 1.27e4
  • 1.73e4
71.43
  • 71.43
  • 69.99
  • 68.40
  • 57.59
  • 42.06
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
9.44e3
  • 9.44e3
  • 9.96e3
  • 1.20e4
  • 1.20e4
  • 1.21e4
  • 1.21e4
  • 1.25e4
  • 1.31e4
  • 1.49e4
68.40
  • 68.40
  • 66.65
  • 59.98
  • 59.98
  • 59.36
  • 59.36
  • 58.31
  • 56.24
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
9.96e3
  • 9.96e3
  • 1.05e4
66.65
  • 66.65
  • 64.98
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.04e4
  • 1.04e4
65.24
  • 65.24
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.47
  • 62.47
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
1.20e4
  • 1.20e4
59.98
  • 59.98
AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.23e4
  • 1.23e4
  • 1.23e4
  • 1.23e4
58.80
  • 58.80
  • 58.80
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.24
  • 58.24
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.90
  • 55.90
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.38e4
  • 1.38e4
  • 1.44e4
53.68
  • 53.68
  • 51.71
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
43.94
  • 43.94
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.64
  • 40.64
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.60
  • 36.60
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.92e4
  • 1.92e4
35.76
  • 35.76
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.92e4
  • 1.92e4
35.59
  • 35.59
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.00e4
  • 2.00e4
33.17
  • 33.17
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.18e4
  • 2.18e4
27.16
  • 27.16
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.19e4
  • 2.19e4
26.79
  • 26.79
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBC065863, BX294110, EU348854
EnsemblENSDARG00000045808 (rlbp1b)
Uniprot/SPTREMBLQ6P027, Q6P027_DANRE
ZFINZDB-GENE-040426-1870 (rlbp1b)

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