D. rerio Gene: lrtm2b - ENSDARG00000045811 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000045811
Namelrtm2b
Descriptionleucine-rich repeats and transmembrane domains 2b [Source:ZFIN;Acc:ZDB-GENE-131121-544]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-218l23.3, zmp:0000000628

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
2.16e3
  • 2.16e3
92.76
  • 92.76
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.32e4
  • 1.32e4
  • 2.36e4
55.65
  • 55.65
  • 21.03
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
1.42e4
  • 1.42e4
  • 2.09e4
  • 2.77e4
52.58
  • 52.58
  • 29.92
  • 7.41
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.06
  • 43.06
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.84e4
  • 1.84e4
38.53
  • 38.53
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.08e4
  • 2.08e4
30.52
  • 30.52
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.12e4
  • 2.12e4
28.90
  • 28.90
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.42e4
  • 2.42e4
19.08
  • 19.08
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.68e4
  • 2.68e4
10.34
  • 10.34
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLBX897714
EnsemblENSDARG00000045811 (lrtm2b)
Uniprot/SPTREMBLE7EXY6, E7EXY6_DANRE
ZFINZDB-GENE-131121-544 (lrtm2b)

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