D. rerio Gene: scaf11 - ENSDARG00000045885 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000045885
Namescaf11
DescriptionSR-related CTD-associated factor 11 [Source:ZFIN;Acc:ZDB-GENE-041210-22]
OrganismDanio rerio (zebrafish)
Synonym(s)fe25f09, sfrs2ip, si:ch211-132p20.2, srsf2ip, wu:fe25f09

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
534
  • 534
98.22
  • 98.22
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
710
  • 710
97.63
  • 97.63
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
745
  • 745
97.51
  • 97.51
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
760
  • 760
  • 1.56e3
  • 1.92e3
  • 1.94e3
  • 2.20e3
  • 2.28e3
97.46
  • 97.46
  • 94.77
  • 93.58
  • 93.52
  • 92.64
  • 92.38
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.23e3
  • 1.23e3
  • 1.87e3
  • 2.83e3
  • 1.17e4
95.87
  • 95.87
  • 93.73
  • 90.51
  • 60.67
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.40e3
  • 1.40e3
95.33
  • 95.33
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
1.54e3
  • 1.54e3
  • 1.64e3
  • 2.44e3
  • 4.79e3
  • 5.68e3
94.86
  • 94.86
  • 94.51
  • 91.83
  • 83.95
  • 80.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000106zygote stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
1.93e3
  • 1.93e3
  • 2.20e3
  • 2.36e3
  • 2.49e3
  • 2.98e3
  • 3.58e3
  • 3.65e3
  • 4.64e3
  • 4.68e3
  • 5.42e3
  • 6.23e3
  • 6.33e3
  • 6.54e3
  • 6.89e3
93.56
  • 93.56
  • 92.64
  • 92.09
  • 91.66
  • 90.02
  • 88.02
  • 87.79
  • 84.48
  • 84.34
  • 81.85
  • 79.15
  • 78.79
  • 78.11
  • 76.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
1.97e3
  • 1.97e3
  • 2.36e3
  • 3.55e3
  • 3.70e3
  • 3.90e3
  • 4.14e3
  • 4.54e3
  • 4.94e3
  • 4.95e3
  • 6.65e3
93.41
  • 93.41
  • 92.10
  • 88.11
  • 87.61
  • 86.94
  • 86.15
  • 84.80
  • 83.44
  • 83.43
  • 77.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
2.84e3
  • 2.84e3
90.51
  • 90.51
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
3.04e3
  • 3.04e3
  • 3.91e3
89.81
  • 89.81
  • 86.89
AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
3.58e3
  • 3.58e3
88.02
  • 88.02
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.71e3
  • 3.71e3
87.58
  • 87.58
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.79e3
  • 3.79e3
87.30
  • 87.30
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.95e3
  • 3.95e3
86.78
  • 86.78
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.03e3
  • 4.03e3
86.51
  • 86.51
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
4.17e3
  • 4.17e3
86.05
  • 86.05
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.17e3
  • 4.17e3
  • 6.87e3
86.05
  • 86.05
  • 76.99
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.31e3
  • 4.31e3
85.58
  • 85.58
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.51e3
  • 4.51e3
84.91
  • 84.91
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.63e3
  • 4.63e3
84.51
  • 84.51
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.83e3
  • 4.83e3
83.83
  • 83.83
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
4.94e3
  • 4.94e3
  • 5.72e3
  • 5.90e3
83.45
  • 83.45
  • 80.85
  • 80.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.12e3
  • 5.12e3
82.87
  • 82.87
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.12e3
  • 5.12e3
82.85
  • 82.85
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.37e3
  • 5.37e3
82.04
  • 82.04
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.44e3
  • 5.44e3
81.77
  • 81.77
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.70e3
  • 5.70e3
80.91
  • 80.91
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
6.08e3
  • 6.08e3
  • 9.02e3
79.64
  • 79.64
  • 69.79
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
6.46e3
  • 6.46e3
78.36
  • 78.36
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
6.52e3
  • 6.52e3
78.16
  • 78.16
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
7.42e3
  • 7.42e3
  • 8.71e3
75.15
  • 75.15
  • 70.82
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.61
  • 54.61
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.84
  • 53.84
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAL929171
EnsemblENSDARG00000045885 (scaf11)
Uniprot/SPTREMBLF8W5M3, F8W5M3_DANRE, Q5SPB2, Q5SPB2_DANRE
ZFINZDB-GENE-041210-22 (scaf11)

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