D. rerio Gene: slc38a2 - ENSDARG00000045886 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000045886
Nameslc38a2
Descriptionsolute carrier family 38, member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9659]
OrganismDanio rerio (zebrafish)
Synonym(s)cb115, sb:cb115, si:ch211-132p20.4, snat2, wu:fj34c01
Orthologs(s)20 orthologs
Paralog(s)11 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
737
  • 737
97.54
  • 97.54
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
824
  • 824
97.24
  • 97.24
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
939
  • 939
  • 2.39e3
96.86
  • 96.86
  • 92.00
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.18e3
  • 1.18e3
96.05
  • 96.05
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
1.21e3
  • 1.21e3
  • 1.26e4
  • 1.49e4
95.96
  • 95.96
  • 57.70
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.23e3
  • 1.23e3
  • 1.82e3
  • 5.14e3
  • 7.42e3
95.89
  • 95.89
  • 93.92
  • 82.80
  • 75.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.24e3
  • 1.24e3
95.84
  • 95.84
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.49e3
  • 1.49e3
  • 2.25e3
95.01
  • 95.01
  • 92.46
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.72e3
  • 1.72e3
94.25
  • 94.25
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.12e3
  • 2.12e3
92.90
  • 92.90
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.74e3
  • 2.74e3
90.82
  • 90.82
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
2.77e3
  • 2.77e3
  • 4.11e3
  • 4.92e3
  • 6.49e3
  • 7.00e3
  • 8.45e3
  • 1.10e4
  • 1.19e4
  • 1.21e4
  • 1.24e4
90.73
  • 90.73
  • 86.24
  • 83.52
  • 78.28
  • 76.56
  • 71.69
  • 63.08
  • 60.30
  • 59.49
  • 58.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.82e3
  • 2.82e3
90.56
  • 90.56
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.09e3
  • 3.09e3
89.67
  • 89.67
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000036Larval:Day 4
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000109gastrula stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
3.12e3
  • 3.12e3
  • 4.48e3
  • 4.67e3
  • 5.34e3
  • 5.38e3
  • 5.87e3
  • 6.14e3
  • 6.23e3
  • 6.66e3
  • 8.34e3
  • 8.53e3
  • 9.59e3
  • 9.92e3
  • 1.19e4
  • 1.46e4
  • 1.47e4
  • 1.47e4
89.57
  • 89.57
  • 84.99
  • 84.37
  • 82.14
  • 82.00
  • 80.34
  • 79.44
  • 79.13
  • 77.72
  • 72.06
  • 71.46
  • 67.90
  • 66.79
  • 60.00
  • 51.01
  • 50.90
  • 50.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.41e3
  • 3.41e3
88.59
  • 88.59
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.56e3
  • 3.56e3
88.07
  • 88.07
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.60e3
  • 3.60e3
87.93
  • 87.93
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
4.03e3
  • 4.03e3
  • 5.06e3
  • 6.28e3
  • 6.41e3
  • 7.54e3
  • 8.81e3
86.51
  • 86.51
  • 83.07
  • 78.97
  • 78.54
  • 74.77
  • 70.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
4.78e3
  • 4.78e3
  • 5.40e3
  • 6.24e3
83.99
  • 83.99
  • 81.92
  • 79.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
5.62e3
  • 5.62e3
81.18
  • 81.18
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.82e3
  • 6.82e3
77.16
  • 77.16
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.27e3
  • 8.27e3
72.33
  • 72.33
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
8.51e3
  • 8.51e3
  • 1.08e4
  • 1.21e4
71.51
  • 71.51
  • 63.68
  • 59.39
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.54e3
  • 8.54e3
71.42
  • 71.42
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
8.68e3
  • 8.68e3
70.93
  • 70.93
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
8.70e3
  • 8.70e3
  • 1.06e4
70.88
  • 70.88
  • 64.64
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
9.31e3
  • 9.31e3
68.82
  • 68.82
AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.07e4
  • 1.07e4
  • 1.10e4
  • 1.34e4
  • 1.34e4
64.27
  • 64.27
  • 63.32
  • 55.24
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.12e4
  • 1.12e4
62.64
  • 62.64
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000026Segmentation:14-19 somites
1.20e4
  • 1.20e4
59.97
  • 59.97
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.17
  • 58.17
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.28e4
  • 1.28e4
57.10
  • 57.10
AEIR
  • AEIR
UBERON:0005426lens vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
1.32e4
  • 1.32e4
  • 1.34e4
  • 1.40e4
55.86
  • 55.86
  • 54.97
  • 53.10
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression
Opisthokonta11 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000045886.

Cross-references

EnsemblENSDARG00000045886 (slc38a2)
ZFINZDB-GENE-030131-9659 (slc38a2)
EMBLAL929171
Uniprot/SWISSPROTQ5SPB1, S38A2_DANRE

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