D. rerio Gene: mmp30 - ENSDARG00000045887 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000045887
Namemmp30
Descriptionmatrix metallopeptidase 30 [Source:ZFIN;Acc:ZDB-GENE-060421-5765]
OrganismDanio rerio (zebrafish)
Synonym(s)mmplf, zgc:136396

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.71e3
  • 1.71e3
  • 6.83e3
94.27
  • 94.27
  • 77.12
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.80e3
  • 1.80e3
93.96
  • 93.96
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.92e3
  • 1.92e3
  • 5.16e3
93.58
  • 93.58
  • 82.71
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
2.32e3
  • 2.32e3
  • 4.10e3
  • 5.39e3
  • 7.35e3
  • 1.37e4
92.23
  • 92.23
  • 86.27
  • 81.94
  • 75.38
  • 54.02
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
6.39e3
  • 6.39e3
  • 9.19e3
78.60
  • 78.60
  • 69.23
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.88e3
  • 6.88e3
76.97
  • 76.97
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.63e3
  • 7.63e3
74.45
  • 74.45
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.17e4
  • 1.17e4
60.91
  • 60.91
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.53e4
  • 1.53e4
48.78
  • 48.78
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.70
  • 46.70
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
1.62e4
  • 1.62e4
45.88
  • 45.88
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.75e4
  • 1.75e4
41.44
  • 41.44
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.07e4
  • 2.07e4
30.76
  • 30.76
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.22e4
  • 2.22e4
25.77
  • 25.77
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.29e4
  • 2.29e4
23.30
  • 23.30
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.38e4
  • 2.38e4
20.17
  • 20.17
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000045887 (mmp30)
Uniprot/SPTREMBLF1RBI6, F1RBI6_DANRE
ZFINZDB-GENE-060421-5765 (mmp30)

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