D. rerio Gene: si:ch211-152c2.3 - ENSDARG00000045898 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000045898
Namesi:ch211-152c2.3
Descriptionsi:ch211-152c2.3 [Source:ZFIN;Acc:ZDB-GENE-030131-9914]
OrganismDanio rerio (zebrafish)
Synonym(s)cb612, sb:cb612, wu:fe05a06

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
46.2
  • 46.2
  • 59.0
99.85
  • 99.85
  • 99.81
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
176
  • 176
  • 1.52e4
99.41
  • 99.41
  • 49.02
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
751
  • 751
97.49
  • 97.49
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.13e3
  • 1.13e3
  • 1.76e3
96.23
  • 96.23
  • 94.11
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.24e3
  • 1.24e3
95.85
  • 95.85
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.49e3
  • 1.49e3
95.00
  • 95.00
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.88e3
  • 1.88e3
  • 5.62e3
93.71
  • 93.71
  • 81.18
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
2.15e3
  • 2.15e3
  • 3.27e3
  • 3.63e3
  • 3.94e3
  • 6.40e3
92.80
  • 92.80
  • 89.04
  • 87.86
  • 86.81
  • 78.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000001Kupffer's vesicle
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
4.98e3
  • 4.98e3
  • 5.75e3
  • 5.75e3
83.33
  • 83.33
  • 80.76
  • 80.76
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.35e3
  • 5.35e3
82.10
  • 82.10
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.59e3
  • 5.59e3
81.29
  • 81.29
AEIR
  • AEIR
UBERON:0009614hindbrain neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
5.75e3
  • 5.75e3
  • 5.75e3
  • 6.40e3
80.76
  • 80.76
  • 80.76
  • 78.56
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.49e3
  • 9.49e3
68.23
  • 68.23
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
9.71e3
  • 9.71e3
  • 1.02e4
  • 1.17e4
  • 1.18e4
  • 1.20e4
  • 1.25e4
  • 1.28e4
67.48
  • 67.48
  • 65.89
  • 60.84
  • 60.50
  • 59.98
  • 58.29
  • 57.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.02e4
  • 1.02e4
  • 1.05e4
  • 1.07e4
  • 1.10e4
65.77
  • 65.77
  • 64.98
  • 64.27
  • 63.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.60
  • 62.60
AEIR
  • AEIR
UBERON:0005426lens vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
1.14e4
  • 1.14e4
  • 1.20e4
  • 1.21e4
61.75
  • 61.75
  • 59.98
  • 59.36
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.31
  • 61.31
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.17e4
  • 1.17e4
60.73
  • 60.73
AEIR
  • AEIR
ZFA:0000023forerunner cell group (Danio)
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
1.21e4
  • 1.21e4
  • 1.26e4
  • 1.26e4
  • 1.28e4
  • 1.36e4
  • 1.36e4
59.36
  • 59.36
  • 57.68
  • 57.68
  • 57.13
  • 54.53
  • 54.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000026Segmentation:14-19 somites
1.26e4
  • 1.26e4
57.87
  • 57.87
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
  • 1.70e4
56.35
  • 56.35
  • 43.13
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
51.56
  • 51.56
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.49e4
  • 1.49e4
50.22
  • 50.22
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.69
  • 47.69
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.01
  • 46.01
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.79
  • 45.79
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.75
  • 43.75
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.40
  • 42.40
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.70
  • 36.70
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000045898 (si:ch211-152c2.3)
ZFINZDB-GENE-030131-9914 (si:ch211-152c2.3)
Uniprot/SPTREMBLF1RAX9, F1RAX9_DANRE

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