D. rerio Gene: nr2e3 - ENSDARG00000045904 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000045904
Namenr2e3
Descriptionnuclear receptor subfamily 2, group E, member 3 [Source:ZFIN;Acc:ZDB-GENE-041114-63]
OrganismDanio rerio (zebrafish)
Synonym(s)fj55b07, nr2d2, pnr, wu:fj55b07, zgc:103631

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000032Pharyngula:High-pec
237
  • 237
  • 907
  • 1.82e3
  • 1.95e3
  • 3.25e3
  • 4.98e3
  • 7.47e3
99.21
  • 99.21
  • 96.97
  • 93.90
  • 93.47
  • 89.13
  • 83.33
  • 74.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
830
  • 830
  • 934
  • 1.99e3
  • 2.13e3
  • 2.36e3
  • 3.56e3
  • 3.98e3
  • 4.67e3
  • 4.98e3
  • 7.47e3
  • 8.54e3
97.22
  • 97.22
  • 96.88
  • 93.33
  • 92.86
  • 92.10
  • 88.09
  • 86.66
  • 84.37
  • 83.34
  • 75.00
  • 71.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001787photoreceptor layer of retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000036Larval:Day 4
1.49e3
  • 1.49e3
  • 1.87e3
  • 5.60e3
  • 5.60e3
  • 5.97e3
  • 5.97e3
  • 7.47e3
95.00
  • 95.00
  • 93.75
  • 81.25
  • 81.25
  • 80.00
  • 80.00
  • 75.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
5.81e3
  • 5.81e3
  • 9.39e3
  • 1.08e4
  • 1.75e4
  • 1.78e4
  • 1.79e4
  • 1.90e4
  • 2.02e4
80.54
  • 80.54
  • 68.57
  • 63.76
  • 41.29
  • 40.40
  • 39.93
  • 36.28
  • 32.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
7.03e3
  • 7.03e3
  • 7.03e3
  • 7.03e3
76.46
  • 76.46
  • 76.46
  • 76.46
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001789outer nuclear layer of retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
7.47e3
  • 7.47e3
  • 8.53e3
75.00
  • 75.00
  • 71.43
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000036Larval:Day 4
  • UBERON:0000104life cycle
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
1.00e4
  • 1.00e4
  • 1.09e4
  • 1.21e4
  • 1.49e4
  • 1.50e4
  • 1.60e4
  • 1.77e4
  • 1.78e4
  • 1.79e4
  • 1.80e4
  • 1.83e4
66.48
  • 66.48
  • 63.44
  • 59.36
  • 50.06
  • 49.92
  • 46.55
  • 40.57
  • 40.38
  • 40.18
  • 39.85
  • 38.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.06e4
  • 1.06e4
  • 1.24e4
  • 1.29e4
64.42
  • 64.42
  • 58.44
  • 56.81
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
  • 1.80e4
63.20
  • 63.20
  • 39.60
AEIR
  • AEIR
  • AEIR
UBERON:0006222future diencephalon
  • ZFS:0000024Segmentation:5-9 somites
1.15e4
  • 1.15e4
61.53
  • 61.53
AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000033Hatching:Long-pec
1.24e4
  • 1.24e4
58.32
  • 58.32
AEIR
  • AEIR
UBERON:0005425presumptive neural retina
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
CL:0000604retinal rod cell
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAL929050
EnsemblENSDARG00000045904 (nr2e3)
Uniprot/SPTREMBLF1QGF3, F1QGF3_DANRE
ZFINZDB-GENE-041114-63 (nr2e3)

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