D. rerio Gene: crabp1a - ENSDARG00000045926 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000045926
Namecrabp1a
Descriptioncellular retinoic acid binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-020320-3]
OrganismDanio rerio (zebrafish)
Synonym(s)crabp1, zgc:110497
Orthologs(s)13 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.13e3
  • 1.13e3
96.21
  • 96.21
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.16e3
  • 1.16e3
96.12
  • 96.12
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.33e3
  • 1.33e3
  • 1.19e4
95.54
  • 95.54
  • 60.28
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.39e3
  • 1.39e3
  • 3.18e3
95.35
  • 95.35
  • 89.35
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
3.27e3
  • 3.27e3
  • 3.51e3
  • 6.49e3
  • 8.32e3
  • 1.34e4
89.05
  • 89.05
  • 88.25
  • 78.28
  • 72.14
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
3.30e3
  • 3.30e3
  • 5.39e3
  • 1.26e4
  • 1.33e4
  • 1.95e4
  • 1.99e4
88.97
  • 88.97
  • 81.97
  • 57.94
  • 55.42
  • 34.70
  • 33.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002198neurohypophysis
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
3.73e3
  • 3.73e3
  • 4.98e3
  • 7.47e3
  • 7.47e3
  • 1.49e4
  • 1.49e4
87.50
  • 87.50
  • 83.34
  • 75.00
  • 75.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
4.98e3
  • 4.98e3
  • 9.28e3
  • 9.34e3
83.33
  • 83.33
  • 68.92
  • 68.72
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000032Pharyngula:High-pec
7.47e3
  • 7.47e3
  • 1.16e4
  • 1.26e4
  • 1.26e4
  • 1.28e4
  • 1.40e4
75.00
  • 75.00
  • 61.09
  • 57.87
  • 57.87
  • 57.14
  • 53.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003053ventricular zone
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
7.47e3
  • 7.47e3
  • 1.26e4
  • 1.37e4
75.00
  • 75.00
  • 57.68
  • 54.15
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.82e3
  • 7.82e3
73.83
  • 73.83
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
8.62e3
  • 8.62e3
  • 8.92e3
  • 1.03e4
  • 1.12e4
  • 1.20e4
  • 1.33e4
  • 1.79e4
  • 1.80e4
71.12
  • 71.12
  • 70.13
  • 65.61
  • 62.45
  • 59.82
  • 55.47
  • 40.18
  • 39.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • ZFS:0000037Larval:Day 5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
9.96e3
  • 9.96e3
  • 1.15e4
  • 1.15e4
  • 1.16e4
  • 1.16e4
  • 1.24e4
  • 1.28e4
  • 1.49e4
66.67
  • 66.67
  • 61.53
  • 61.53
  • 61.10
  • 61.10
  • 58.32
  • 57.13
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007812post-anal tail
  • ZFS:0000031Pharyngula:Prim-25
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000025Segmentation:10-13 somites
1.05e4
  • 1.05e4
  • 1.34e4
  • 1.42e4
  • 1.49e4
64.99
  • 64.99
  • 54.97
  • 52.60
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
1.12e4
  • 1.12e4
  • 1.18e4
  • 1.41e4
  • 1.41e4
62.49
  • 62.49
  • 60.50
  • 52.92
  • 52.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.36
  • 60.36
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
  • 1.34e4
55.24
  • 55.24
  • 54.99
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000029Pharyngula:Prim-5
1.36e4
  • 1.36e4
54.53
  • 54.53
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.29
  • 54.29
AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000029Pharyngula:Prim-5
1.38e4
  • 1.38e4
53.83
  • 53.83
AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.40e4
  • 1.40e4
  • 1.49e4
53.10
  • 53.10
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.43e4
  • 1.43e4
  • 1.90e4
52.13
  • 52.13
  • 36.30
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.58
  • 44.58
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.74
  • 43.74
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.78
  • 42.78
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.04e4
  • 2.04e4
31.71
  • 31.71
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.04e4
  • 2.04e4
31.56
  • 31.56
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.23e4
  • 2.23e4
25.40
  • 25.40
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Clupeocephala1 geneCompare expression
Vertebrata3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000045926.

Cross-references

EnsemblENSDARG00000045926 (crabp1a)
ZFINZDB-GENE-020320-3 (crabp1a)
EMBLAY242125, BC091464, BC164739, BX296538, CU207224
Uniprot/SPTREMBLE9QD41, E9QD41_DANRE, Q7T0F4, Q7T0F4_DANRE

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