D. rerio Gene: rbpms2a - ENSDARG00000045930 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000045930
Namerbpms2a
DescriptionRNA binding protein with multiple splicing 2a [Source:ZFIN;Acc:ZDB-GENE-040718-106]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:92689

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
440
  • 440
  • 670
  • 8.96e3
  • 9.44e3
98.53
  • 98.53
  • 97.76
  • 69.99
  • 68.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000066fully formed stage
631
  • 631
  • 1.30e4
  • 1.46e4
97.89
  • 97.89
  • 56.49
  • 51.07
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.11e3
  • 1.11e3
96.30
  • 96.30
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.24e3
  • 1.24e3
95.85
  • 95.85
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.43e3
  • 1.43e3
95.22
  • 95.22
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.44e3
  • 1.44e3
95.17
  • 95.17
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.82e3
  • 1.82e3
  • 1.50e4
93.91
  • 93.91
  • 49.89
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.08e3
  • 2.08e3
93.05
  • 93.05
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.53e3
  • 2.53e3
91.52
  • 91.52
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
2.87e3
  • 2.87e3
  • 2.90e3
  • 9.83e3
  • 1.03e4
  • 1.12e4
90.40
  • 90.40
  • 90.29
  • 67.09
  • 65.57
  • 62.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
2.88e3
  • 2.88e3
  • 7.71e3
90.36
  • 90.36
  • 74.18
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.04e3
  • 3.04e3
89.84
  • 89.84
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.06e3
  • 3.06e3
89.77
  • 89.77
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.12e3
  • 3.12e3
89.57
  • 89.57
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.48e3
  • 3.48e3
  • 3.48e3
88.35
  • 88.35
  • 88.34
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.50e3
  • 3.50e3
88.29
  • 88.29
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.11e3
  • 4.11e3
86.22
  • 86.22
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000068embryo stage
5.77e3
  • 5.77e3
  • 9.96e3
  • 1.46e4
80.67
  • 80.67
  • 66.65
  • 51.01
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
5.90e3
  • 5.90e3
  • 7.57e3
80.26
  • 80.26
  • 74.67
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.02e3
  • 6.02e3
79.86
  • 79.86
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.72e3
  • 6.72e3
77.51
  • 77.51
AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
6.97e3
  • 6.97e3
  • 7.47e3
  • 8.53e3
  • 8.71e3
76.66
  • 76.66
  • 75.00
  • 71.43
  • 70.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
7.41e3
  • 7.41e3
  • 9.93e3
75.19
  • 75.19
  • 66.75
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.63e3
  • 7.63e3
74.44
  • 74.44
AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.40e3
  • 8.40e3
  • 8.54e3
  • 9.19e3
  • 9.60e3
71.86
  • 71.86
  • 71.42
  • 69.22
  • 67.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.58e3
  • 8.58e3
71.28
  • 71.28
AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
8.79e3
  • 8.79e3
  • 9.34e3
  • 9.34e3
  • 9.34e3
  • 1.05e4
  • 1.05e4
  • 1.10e4
70.57
  • 70.57
  • 68.74
  • 68.74
  • 68.74
  • 64.98
  • 64.98
  • 63.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.95e3
  • 8.95e3
70.02
  • 70.02
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.98e3
  • 8.98e3
69.93
  • 69.93
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
9.76e3
  • 9.76e3
67.30
  • 67.30
AEIR
  • AEIR
UBERON:0004291heart rudiment
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
9.96e3
  • 9.96e3
  • 1.03e4
  • 1.08e4
66.65
  • 66.65
  • 65.37
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000083ventral mesoderm
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
9.96e3
  • 9.96e3
  • 9.96e3
  • 1.07e4
66.65
  • 66.65
  • 66.65
  • 64.27
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003084heart primordium
  • ZFS:0000026Segmentation:14-19 somites
1.05e4
  • 1.05e4
64.69
  • 64.69
AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.08e4
  • 1.08e4
  • 1.12e4
63.87
  • 63.87
  • 62.48
AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.30e4
  • 1.30e4
56.48
  • 56.48
AEIR
  • AEIR
CL:0000561amacrine cell
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBC076171, BC152178, BX296538, CU570688
EnsemblENSDARG00000045930 (rbpms2a)
Uniprot/SPTREMBLQ6DH13, Q6DH13_DANRE
ZFINZDB-GENE-040718-106 (rbpms2a)

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