D. rerio Gene: pax6b - ENSDARG00000045936 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000045936
Namepax6b
Descriptionpaired box 6b [Source:ZFIN;Acc:ZDB-GENE-001031-1]
OrganismDanio rerio (zebrafish)
Synonym(s)cb566, fc09c10, id:ibd5095, pax6.2, sri(l), wu:fc09c10, wu:fc33g08

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000039Larval:Days 7-13
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000035Larval:Protruding-mouth
213
  • 213
  • 960
  • 2.09e3
  • 3.74e3
  • 7.47e3
  • 1.12e4
  • 1.17e4
  • 1.39e4
99.29
  • 99.29
  • 96.79
  • 93.01
  • 87.49
  • 75.00
  • 62.50
  • 60.84
  • 53.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.11e3
  • 1.11e3
96.28
  • 96.28
AEIR
  • AEIR
UBERON:0003921pancreas primordium
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
1.24e3
  • 1.24e3
  • 1.36e3
  • 2.30e3
  • 1.12e4
  • 1.33e4
95.84
  • 95.84
  • 95.46
  • 92.31
  • 62.50
  • 55.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.38e3
  • 1.38e3
  • 9.96e3
  • 1.29e4
  • 1.36e4
  • 1.37e4
95.40
  • 95.40
  • 66.66
  • 56.65
  • 54.53
  • 54.15
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
2.13e3
  • 2.13e3
  • 4.67e3
  • 5.75e3
  • 1.24e4
  • 1.41e4
92.86
  • 92.86
  • 84.37
  • 80.76
  • 58.32
  • 52.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
2.49e3
  • 2.49e3
  • 3.32e3
  • 5.27e3
  • 1.04e4
  • 1.22e4
  • 1.36e4
91.67
  • 91.67
  • 88.89
  • 82.35
  • 65.19
  • 59.06
  • 54.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
2.49e3
  • 2.49e3
  • 7.12e3
  • 1.02e4
  • 1.23e4
91.67
  • 91.67
  • 76.18
  • 65.77
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
3.55e3
  • 3.55e3
  • 3.62e3
  • 4.09e3
  • 6.24e3
  • 7.84e3
  • 7.91e3
  • 8.38e3
  • 9.83e3
  • 1.01e4
  • 1.06e4
88.11
  • 88.11
  • 87.89
  • 86.32
  • 79.12
  • 73.75
  • 73.52
  • 71.95
  • 67.09
  • 66.14
  • 64.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003922pancreatic epithelial bud
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
4.07e3
  • 4.07e3
  • 4.98e3
  • 8.53e3
86.36
  • 86.36
  • 83.33
  • 71.43
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
4.27e3
  • 4.27e3
  • 4.48e3
  • 5.34e3
  • 5.98e3
  • 5.98e3
  • 6.50e3
85.71
  • 85.71
  • 84.99
  • 82.13
  • 79.99
  • 79.99
  • 78.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000019Gastrula:Shield
4.55e3
  • 4.55e3
  • 6.07e3
  • 6.48e3
  • 6.64e3
  • 6.95e3
  • 7.97e3
  • 8.34e3
  • 8.60e3
  • 8.64e3
  • 1.04e4
  • 1.07e4
  • 1.31e4
  • 1.40e4
84.76
  • 84.76
  • 79.67
  • 78.31
  • 77.78
  • 76.73
  • 73.33
  • 72.08
  • 71.20
  • 71.08
  • 65.28
  • 64.11
  • 56.04
  • 53.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009614hindbrain neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
4.60e3
  • 4.60e3
  • 4.60e3
  • 5.34e3
84.61
  • 84.61
  • 84.61
  • 82.14
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
5.27e3
  • 5.27e3
  • 5.50e3
  • 1.35e4
82.35
  • 82.35
  • 81.57
  • 54.73
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003071eye primordium
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
5.34e3
  • 5.34e3
  • 5.75e3
  • 5.75e3
82.14
  • 82.14
  • 80.76
  • 80.76
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003072optic cup
  • ZFS:0000029Pharyngula:Prim-5
5.97e3
  • 5.97e3
80.00
  • 80.00
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
6.00e3
  • 6.00e3
  • 7.85e3
  • 1.11e4
  • 1.24e4
  • 1.61e4
  • 1.75e4
79.93
  • 79.93
  • 73.70
  • 62.75
  • 58.59
  • 46.10
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0014371future telencephalon
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
6.40e3
  • 6.40e3
  • 6.89e3
  • 7.47e3
78.56
  • 78.56
  • 76.92
  • 74.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
6.54e3
  • 6.54e3
  • 7.03e3
78.12
  • 78.12
  • 76.46
AEIR
  • AEIR
  • AEIR
UBERON:2007013preplacodal ectoderm
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000022Gastrula:Bud
7.47e3
  • 7.47e3
  • 1.19e4
75.00
  • 75.00
  • 60.00
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000029Pharyngula:Prim-5
7.65e3
  • 7.65e3
  • 7.85e3
  • 1.34e4
74.40
  • 74.40
  • 73.73
  • 54.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
7.87e3
  • 7.87e3
  • 7.88e3
  • 8.92e3
73.65
  • 73.65
  • 73.61
  • 70.14
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
8.79e3
  • 8.79e3
  • 1.08e4
  • 1.14e4
  • 1.15e4
  • 1.20e4
  • 1.23e4
  • 1.25e4
  • 1.25e4
70.57
  • 70.57
  • 63.87
  • 61.88
  • 61.53
  • 59.98
  • 58.80
  • 58.31
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000026Segmentation:14-19 somites
8.96e3
  • 8.96e3
69.98
  • 69.98
AEIR
  • AEIR
CL:0000561amacrine cell
  • ZFS:0000035Larval:Protruding-mouth
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:2007059neurogenic field
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000023Segmentation:1-4 somites
9.96e3
  • 9.96e3
  • 9.96e3
66.67
  • 66.67
  • 66.67
AEIR
  • AEIR
  • AEIR
UBERON:0000016endocrine pancreas
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
9.96e3
  • 9.96e3
  • 1.49e4
66.66
  • 66.66
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.03e4
  • 1.03e4
65.60
  • 65.60
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
1.07e4
  • 1.07e4
  • 1.29e4
64.26
  • 64.26
  • 56.79
AEIR
  • AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.10e4
  • 1.10e4
  • 1.28e4
63.32
  • 63.32
  • 57.14
AEIR
  • AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • ZFS:0000033Hatching:Long-pec
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0003923dorsal pancreatic bud
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
62.49
  • 62.49
AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.12e4
  • 1.12e4
  • 1.20e4
  • 1.20e4
62.48
  • 62.48
  • 59.98
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000029Pharyngula:Prim-5
1.18e4
  • 1.18e4
60.39
  • 60.39
AEIR
  • AEIR
UBERON:0003065ciliary marginal zone
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
1.19e4
  • 1.19e4
  • 1.49e4
  • 1.49e4
60.00
  • 60.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
1.20e4
  • 1.20e4
  • 1.26e4
  • 1.26e4
  • 1.26e4
  • 1.26e4
  • 1.26e4
59.98
  • 59.98
  • 57.68
  • 57.68
  • 57.68
  • 57.68
  • 57.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.22e4
  • 1.22e4
  • 1.24e4
59.08
  • 59.08
  • 58.32
AEIR
  • AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
57.12
  • 57.12
AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000033Hatching:Long-pec
1.29e4
  • 1.29e4
56.65
  • 56.65
AEIR
  • AEIR
UBERON:0005425presumptive neural retina
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
ZFA:0000092axis (Danio)
  • ZFS:0000022Gastrula:Bud
1.33e4
  • 1.33e4
55.53
  • 55.53
AEIR
  • AEIR
UBERON:0005426lens vesicle
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
1.35e4
  • 1.35e4
  • 1.39e4
54.73
  • 54.73
  • 53.55
AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • ZFS:0000033Hatching:Long-pec
1.37e4
  • 1.37e4
54.15
  • 54.15
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.43e4
  • 1.43e4
52.13
  • 52.13
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.43e4
  • 1.43e4
52.03
  • 52.03
AEIR
  • AEIR
CL:0000163endocrine cell
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001772corneal epithelium
  • ZFS:0000042Juvenile:Days 30-44
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001801anterior segment of eyeball
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000039Larval:Days 7-13
  • ZFS:0000042Juvenile:Days 30-44
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001985corneal endothelium
  • ZFS:0000039Larval:Days 7-13
  • ZFS:0000042Juvenile:Days 30-44
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
CL:0000740retinal ganglion cell
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000204ventral part of telencephalon
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0003056pre-chordal neural plate
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0003073lens placode
  • ZFS:0000025Segmentation:10-13 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2007026forebrain neural keel
  • ZFS:0000022Gastrula:Bud
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.72e4
  • 1.72e4
42.36
  • 42.36
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
36.10
  • 36.10
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.02e4
  • 2.02e4
32.26
  • 32.26
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
32.05
  • 32.05
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.17e4
  • 2.17e4
27.32
  • 27.32
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

Do not show this banner again