D. rerio Gene: slc6a1a - ENSDARG00000045944 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000045944
Nameslc6a1a
Descriptionsolute carrier family 6 (neurotransmitter transporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-060519-23]
OrganismDanio rerio (zebrafish)
Synonym(s)fj43h03, wu:fj43h03, zgc:136569
Orthologs(s)3 orthologs
Paralog(s)29 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.65e3
  • 1.65e3
94.49
  • 94.49
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.08e3
  • 2.08e3
  • 1.45e4
93.03
  • 93.03
  • 51.33
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
2.31e3
  • 2.31e3
  • 6.37e3
  • 1.67e4
92.28
  • 92.28
  • 78.68
  • 44.23
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.83e3
  • 2.83e3
  • 3.68e3
90.54
  • 90.54
  • 87.69
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
8.58e3
  • 8.58e3
  • 1.75e4
71.28
  • 71.28
  • 41.25
AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.31e4
  • 2.31e4
22.69
  • 22.69
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi3 species3 genesCompare expression

Orthology information comes from OMA : ENSDARG00000045944.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Neopterygii1 geneCompare expression
Chordata2 genesCompare expression
Deuterostomia7 genesCompare expression
Bilateria11 genesCompare expression
Eukaryota29 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000045944.

Cross-references

EnsemblENSDARG00000045944 (slc6a1a)
ZFINZDB-GENE-060519-23 (slc6a1a)
EMBLCR354596
Uniprot/SPTREMBLF1QUY7, F1QUY7_DANRE

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