D. rerio Gene: kdm2bb - ENSDARG00000046010 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000046010
Namekdm2bb
Descriptionlysine (K)-specific demethylase 2Bb [Source:ZFIN;Acc:ZDB-GENE-080225-13]
OrganismDanio rerio (zebrafish)
Synonym(s)fbxl10, im:7154787, im:7154787 {eco:0000313|embl:aai24461.1,gn eco:0000313|zfin:zdb-gene-080225-13}
Orthologs(s)23 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.02e3
  • 5.02e3
83.20
  • 83.20
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
5.37e3
  • 5.37e3
82.02
  • 82.02
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
6.62e3
  • 6.62e3
77.83
  • 77.83
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.67e3
  • 6.67e3
77.68
  • 77.68
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.02e3
  • 7.02e3
76.51
  • 76.51
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.55e3
  • 7.55e3
74.71
  • 74.71
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
7.96e3
  • 7.96e3
  • 8.61e3
  • 1.04e4
  • 1.11e4
  • 1.16e4
73.36
  • 73.36
  • 71.16
  • 65.09
  • 62.80
  • 61.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
8.13e3
  • 8.13e3
  • 1.03e4
72.76
  • 72.76
  • 65.67
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
8.39e3
  • 8.39e3
  • 1.50e4
71.91
  • 71.91
  • 49.89
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
8.61e3
  • 8.61e3
71.18
  • 71.18
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.75e3
  • 8.75e3
70.69
  • 70.69
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
9.15e3
  • 9.15e3
  • 1.05e4
69.35
  • 69.35
  • 64.70
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.21e3
  • 9.21e3
69.16
  • 69.16
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.63e3
  • 9.63e3
67.75
  • 67.75
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
9.72e3
  • 9.72e3
  • 1.05e4
67.44
  • 67.44
  • 64.75
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.69
  • 65.69
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.03e4
  • 1.03e4
  • 1.06e4
65.64
  • 65.64
  • 64.48
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.45
  • 63.45
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.93
  • 59.93
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.70
  • 59.70
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
58.99
  • 58.99
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.83
  • 57.83
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.60
  • 54.60
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.93
  • 52.93
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species19 genesCompare expression
Bilateria23 species23 genesCompare expression

Orthology information comes from OMA : ENSDARG00000046010.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Bilateria2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000046010.

Cross-references

EnsemblENSDARG00000046010 (kdm2bb)
ZFINZDB-GENE-080225-13 (kdm2bb)
EMBLBC124460, BX005006, FO704696
Uniprot/SPTREMBLQ05AK2, Q05AK2_DANRE

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