D. rerio Gene: snai1b - ENSDARG00000046019 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000046019
Namesnai1b
Descriptionsnail family zinc finger 1b [Source:ZFIN;Acc:ZDB-GENE-980526-514]
OrganismDanio rerio (zebrafish)
Synonym(s)loc792194, sna2, snail-2, snail1b, snail2
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0010170region of neural crest
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
1.99e3
  • 1.99e3
  • 5.98e3
  • 7.47e3
  • 8.71e3
  • 1.24e4
  • 1.49e4
  • 1.49e4
93.33
  • 93.33
  • 79.99
  • 74.99
  • 70.82
  • 58.32
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
3.15e3
  • 3.15e3
  • 3.98e3
89.44
  • 89.44
  • 86.69
AEIR
  • AEIR
  • AEIR
UBERON:0002087atrioventricular canal
  • ZFS:0000035Larval:Protruding-mouth
4.27e3
  • 4.27e3
85.71
  • 85.71
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
5.12e3
  • 5.12e3
82.87
  • 82.87
AEIR
  • AEIR
UBERON:0003068axial mesoderm
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
5.60e3
  • 5.60e3
  • 7.47e3
81.25
  • 81.25
  • 75.00
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
6.17e3
  • 6.17e3
  • 6.52e3
  • 7.28e3
  • 1.31e4
  • 2.30e4
79.34
  • 79.34
  • 78.19
  • 75.61
  • 56.08
  • 23.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • ZFS:0000026Segmentation:14-19 somites
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0002342neural crest
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
8.96e3
  • 8.96e3
  • 8.96e3
  • 1.12e4
  • 1.19e4
70.00
  • 70.00
  • 70.00
  • 62.49
  • 60.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000035Larval:Protruding-mouth
9.96e3
  • 9.96e3
  • 1.12e4
66.67
  • 66.67
  • 62.50
AEIR
  • AEIR
  • AEIR
ZFA:0005490myocardial precursor (Danio)
  • ZFS:0000025Segmentation:10-13 somites
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0000089hypoblast (generic)
  • ZFS:0000019Gastrula:Shield
9.96e3
  • 9.96e3
66.66
  • 66.66
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.76
  • 65.76
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.04e4
  • 1.04e4
  • 1.72e4
65.21
  • 65.21
  • 42.57
AEIR
  • AEIR
  • AEIR
UBERON:0002100trunk
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
1.07e4
  • 1.07e4
  • 1.49e4
64.28
  • 64.28
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
  • 1.93e4
63.32
  • 63.32
  • 35.54
AEIR
  • AEIR
  • AEIR
UBERON:0005253head mesenchyme
  • ZFS:0000026Segmentation:14-19 somites
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0003099cranial neural crest
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
1.19e4
  • 1.19e4
  • 1.19e4
  • 1.49e4
60.00
  • 60.00
  • 60.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000026Segmentation:14-19 somites
1.20e4
  • 1.20e4
59.98
  • 59.98
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.30
  • 59.30
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000030Pharyngula:Prim-15
1.27e4
  • 1.27e4
57.47
  • 57.47
AEIR
  • AEIR
UBERON:0009881anterior lateral plate mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:2007032midbrain neural rod
  • ZFS:0000024Segmentation:5-9 somites
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
1.28e4
  • 1.28e4
  • 1.42e4
57.12
  • 57.12
  • 52.60
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
1.29e4
  • 1.29e4
  • 1.31e4
56.86
  • 56.86
  • 56.22
AEIR
  • AEIR
  • AEIR
UBERON:0003083trunk neural crest
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0005563trigeminal neural crest
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2000414presumptive cephalic mesoderm
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000022Gastrula:Bud
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0007285presumptive paraxial mesoderm
  • ZFS:0000021Gastrula:90%-epiboly
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:2007029hindbrain neural keel
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
49.98
  • 49.98
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.82e4
  • 1.82e4
39.21
  • 39.21
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.91e4
  • 1.91e4
35.88
  • 35.88
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.92e4
  • 1.92e4
35.67
  • 35.67
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
33.67
  • 33.67
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Neopterygii1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000046019.

Cross-references

EnsemblENSDARG00000046019 (snai1b)
ZFINZDB-GENE-980526-514 (snai1b)
EMBLBC162632, CABZ01057947, CABZ01057948
Uniprot/SPTREMBLB3DH44, B3DH44_DANRE, F1QX06, F1QX06_DANRE

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