Gene: mhc1lga - ENSDARG00000051713 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000051713
Name	mhc1lga
Description	major histocompatibility complex class I LGA [Source:ZFIN;Acc:ZDB-GENE-140820-8]
Organism	Danio rerio (zebrafish)
Synonym(s)	si:dkey-52p2.6, si:dkey-52p2.7
Paralog(s)	9 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.39e4 1.39e4	53.30 53.30	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.55e4 1.55e4	48.16 48.16	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	1.66e4 1.66e4	44.33 44.33	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.68e4 1.68e4	43.83 43.83	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.77e4 1.77e4	40.57 40.57	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.79e4 1.79e4	40.16 40.16	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages ZFS:0000036Larval:Day 4 UBERON:0000066fully formed stage	1.80e4 1.80e4 2.06e4	39.73 39.73 31.05	AEIR AEIR AEIR
UBERON:0000033	head	[+] 1 stage UBERON:0000066fully formed stage	2.30e4 2.30e4	23.01 23.01	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Otophysi	9 genes ENSDARG00000016056 mhc1laa ENSDARG00000016227 FCGRT (1 to many) ENSDARG00000023203 mhc1lda ENSDARG00000051710 FCGRT (1 to many) ENSDARG00000051711 FCGRT (1 to many) ENSDARG00000051712 mhc1lfa ENSDARG00000055813 FCGRT (1 to many) ENSDARG00000096830 mhc1lja ENSDARG00000097766 mhc1lia	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000051713.

Cross-references

Ensembl	ENSDARG00000051713 (mhc1lga)
ZFIN	ZDB-GENE-140820-8 (mhc1lga)
EMBL	CR854891
Uniprot/SPTREMBL	F1RAH2, F1RAH2_DANRE, X1WH99, X1WH99_DANRE