D. rerio Gene: ctu2 - ENSDARG00000051851 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000051851
Namectu2
Descriptioncytosolic thiouridylase subunit 2 homolog (S. pombe) [Source:ZFIN;Acc:ZDB-GENE-040801-79]
OrganismDanio rerio (zebrafish)
Synonym(s)f1qnk0, ncs2, zgc:101113
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.38e3
  • 2.38e3
92.05
  • 92.05
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
2.93e3
  • 2.93e3
90.19
  • 90.19
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
3.22e3
  • 3.22e3
  • 4.21e3
  • 8.23e3
  • 8.92e3
  • 9.00e3
89.22
  • 89.22
  • 85.90
  • 72.43
  • 70.12
  • 69.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
4.92e3
  • 4.92e3
  • 6.31e3
  • 7.41e3
  • 9.34e3
  • 9.59e3
  • 9.60e3
83.52
  • 83.52
  • 78.89
  • 75.18
  • 68.74
  • 67.89
  • 67.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.03e3
  • 5.03e3
83.16
  • 83.16
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.48e3
  • 5.48e3
81.67
  • 81.67
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.63e3
  • 5.63e3
81.14
  • 81.14
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.60e3
  • 6.60e3
77.91
  • 77.91
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
6.84e3
  • 6.84e3
77.09
  • 77.09
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
7.02e3
  • 7.02e3
  • 1.50e4
76.49
  • 76.49
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
7.16e3
  • 7.16e3
  • 7.41e3
  • 8.04e3
  • 8.11e3
  • 8.48e3
  • 8.69e3
  • 1.08e4
  • 1.12e4
  • 1.26e4
  • 1.38e4
76.02
  • 76.02
  • 75.19
  • 73.08
  • 72.84
  • 71.62
  • 70.89
  • 63.68
  • 62.42
  • 57.89
  • 53.71
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.22e3
  • 7.22e3
75.83
  • 75.83
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
7.48e3
  • 7.48e3
74.94
  • 74.94
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.51e3
  • 7.51e3
74.85
  • 74.85
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.54e3
  • 7.54e3
74.76
  • 74.76
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.61e3
  • 7.61e3
74.53
  • 74.53
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
8.24e3
  • 8.24e3
  • 9.63e3
  • 9.84e3
  • 9.94e3
  • 1.05e4
  • 1.06e4
  • 1.08e4
  • 1.13e4
  • 1.22e4
  • 1.25e4
  • 1.26e4
  • 1.28e4
  • 1.28e4
  • 1.30e4
  • 1.45e4
  • 1.49e4
72.42
  • 72.42
  • 67.76
  • 67.05
  • 66.72
  • 64.74
  • 64.52
  • 63.88
  • 62.27
  • 59.13
  • 58.31
  • 57.79
  • 57.13
  • 57.00
  • 56.62
  • 51.42
  • 50.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
8.41e3
  • 8.41e3
  • 1.02e4
  • 1.02e4
  • 1.13e4
71.84
  • 71.84
  • 65.79
  • 65.73
  • 62.21
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
8.48e3
  • 8.48e3
  • 9.81e3
71.61
  • 71.61
  • 67.16
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
8.50e3
  • 8.50e3
  • 9.86e3
71.54
  • 71.54
  • 66.97
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.74e3
  • 8.74e3
70.72
  • 70.72
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
9.18e3
  • 9.18e3
69.25
  • 69.25
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.20e3
  • 9.20e3
69.19
  • 69.19
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.39e3
  • 9.39e3
68.57
  • 68.57
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.58e3
  • 9.58e3
67.91
  • 67.91
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.03e4
  • 1.03e4
  • 1.03e4
65.56
  • 65.56
  • 65.35
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.48
  • 65.48
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.04e4
  • 1.04e4
  • 1.17e4
65.02
  • 65.02
  • 60.93
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.89
  • 64.89
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.37
  • 64.37
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.07e4
  • 1.07e4
  • 1.25e4
  • 1.46e4
64.30
  • 64.30
  • 58.01
  • 51.13
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.74
  • 58.74
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000051851 (ctu2)
ZFINZDB-GENE-040801-79 (ctu2)
EMBLBC078233, CR547125
Uniprot/SPTREMBLE9QII1, E9QII1_DANRE, F1R9P9, F1R9P9_DANRE
Uniprot/SWISSPROTCTU2_DANRE, Q6DC53

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