D. rerio Gene: ush1c - ENSDARG00000051876 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000051876
Nameush1c
DescriptionUsher syndrome 1C [Source:ZFIN;Acc:ZDB-GENE-060312-41]
OrganismDanio rerio (zebrafish)
Synonym(s)e7fd99, harmonin, zgc:136806

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
910
  • 910
  • 9.96e3
96.96
  • 96.96
  • 66.67
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
5.66e3
  • 5.66e3
  • 1.74e4
81.06
  • 81.06
  • 41.84
AEIR
  • AEIR
  • AEIR
UBERON:2000168anterior macula
  • ZFS:0000037Larval:Day 5
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
7.81e3
  • 7.81e3
73.85
  • 73.85
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
9.37e3
  • 9.37e3
68.63
  • 68.63
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
1.03e4
  • 1.03e4
  • 1.66e4
  • 1.83e4
  • 1.89e4
  • 1.90e4
65.67
  • 65.67
  • 44.34
  • 38.60
  • 36.71
  • 36.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001846internal ear
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
  • 1.49e4
62.50
  • 62.50
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
  • 1.98e4
62.49
  • 62.49
  • 33.78
AEIR
  • AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000037Larval:Day 5
1.16e4
  • 1.16e4
61.10
  • 61.10
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.71
  • 60.71
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000037Larval:Day 5
1.19e4
  • 1.19e4
59.99
  • 59.99
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.20e4
  • 1.20e4
59.85
  • 59.85
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
  • 1.68e4
57.02
  • 57.02
  • 43.82
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.67
  • 55.67
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.19
  • 53.19
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.40e4
  • 1.40e4
  • 1.44e4
53.13
  • 53.13
  • 51.69
AEIR
  • AEIR
  • AEIR
UBERON:0001789outer nuclear layer of retina
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0007274crista of ampulla of anterior semicircular duct of membranous laybrinth
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0007275crista of ampulla of posterior semicircular duct of membranous laybrinth
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0007276crista of ampulla of lateral semicircular duct of membranous laybrinth
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001774skeletal muscle of trunk
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.88e4
  • 1.88e4
37.01
  • 37.01
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.90e4
  • 1.90e4
36.47
  • 36.47
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.08e4
  • 2.08e4
30.20
  • 30.20
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.17e4
  • 2.17e4
27.32
  • 27.32
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
2.40e4
  • 2.40e4
19.55
  • 19.55
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

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