Gene: mmp15a - ENSDARG00000051962 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000051962
Name	mmp15a
Description	matrix metallopeptidase 15a [Source:ZFIN;Acc:ZDB-GENE-070817-4]
Organism	Danio rerio (zebrafish)
Paralog(s)	7 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000948	heart	[+] 2 stages ZFS:0000036Larval:Day 4 UBERON:0000066fully formed stage	4.51e3 4.51e3 1.25e4	84.91 84.91 58.18	AEIR AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	8.33e3 8.33e3	72.12 72.12	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000033Hatching:Long-pec UBERON:0000068embryo stage UBERON:0004707pharyngula stage ZFS:0000029Pharyngula:Prim-5 ZFS:0000037Larval:Day 5	8.64e3 8.64e3 1.14e4 1.19e4 1.21e4 1.28e4	71.08 71.08 61.83 60.14 59.51 57.24	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	8.89e3 8.89e3	70.25 70.25	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	9.75e3 9.75e3	67.36 67.36	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	9.76e3 9.76e3	67.31 67.31	AEIR AEIR
UBERON:0004734	gastrula	[+] 1 stage ZFS:0000022Gastrula:Bud	1.04e4 1.04e4	65.02 65.02	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	1.15e4 1.15e4 1.17e4	61.51 61.51 60.76	AEIR AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.17e4 1.17e4	60.79 60.79	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	1.19e4 1.19e4	60.17 60.17	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.22e4 1.22e4	59.14 59.14	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.23e4 1.23e4	58.77 58.77	AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000011Blastula:1k-cell ZFS:0000015Blastula:Dome	1.26e4 1.26e4 1.71e4	57.85 57.85 42.86	AEIR AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.28e4 1.28e4	57.16 57.16	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	1.29e4 1.29e4	56.93 56.93	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	1.35e4 1.35e4	54.76 54.76	AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	1.36e4 1.36e4 1.73e4	54.36 54.36 42.09	AEIR AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.40e4 1.40e4	53.03 53.03	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	1.40e4 1.40e4	53.00 53.00	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.50e4 1.50e4	49.77 49.77	AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	1.66e4 1.66e4	44.33 44.33	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	1.67e4 1.67e4	44.06 44.06	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	1.70e4 1.70e4	43.06 43.06	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	1.73e4 1.73e4	42.15 42.15	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Chordata	7 genes ENSDARG00000002235 mmp14a ENSDARG00000008388 mmp14b ENSDARG00000010556 MMP25 (1 to many) ENSDARG00000013072 MMP15 (1 to many) ENSDARG00000018896 mmp24 ENSDARG00000058876 mmp16b ENSDARG00000078915 mmp17a	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000051962.

Cross-references

Ensembl	ENSDARG00000051962 (mmp15a)
ZFIN	ZDB-GENE-070817-4 (mmp15a)
EMBL	AL844894
Uniprot/SPTREMBL	E7FFQ4, E7FFQ4_DANRE