D. rerio Gene: tspan1 - ENSDARG00000052027 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000052027
Nametspan1
Descriptiontetraspanin 1 [Source:ZFIN;Acc:ZDB-GENE-070502-5]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-170g13.3

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:2000940posterior lateral line neuromast
  • ZFS:0000036Larval:Day 4
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.95
  • 56.95
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
1.61e4
  • 1.61e4
45.95
  • 45.95
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
1.93e4
  • 1.93e4
35.44
  • 35.44
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
2.11e4
  • 2.11e4
  • 2.88e4
29.19
  • 29.19
  • 3.49
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.39e4
  • 2.39e4
19.93
  • 19.93
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLCR848680
EnsemblENSDARG00000052027 (tspan1)
Uniprot/SPTREMBLE7FE95, E7FE95_DANRE
ZFINZDB-GENE-070502-5 (tspan1)

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