D. rerio Gene: trim35-1 - ENSDARG00000052037 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000052037
Nametrim35-1
Descriptiontripartite motif containing 35-1 [Source:ZFIN;Acc:ZDB-GENE-050522-17]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:110667

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.37
  • 62.37
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.28
  • 60.28
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.23e4
  • 1.23e4
  • 1.50e4
58.95
  • 58.95
  • 49.89
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.18
  • 58.18
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.57
  • 54.57
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.23
  • 54.23
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.00
  • 54.00
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.00
  • 52.00
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.73
  • 50.73
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
1.50e4
  • 1.50e4
  • 1.50e4
  • 1.50e4
49.92
  • 49.92
  • 49.81
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
  • 1.71e4
45.98
  • 45.98
  • 42.83
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.43
  • 45.43
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.91
  • 43.91
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.60
  • 40.60
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
40.01
  • 40.01
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
36.04
  • 36.04
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
1.92e4
  • 1.92e4
  • 2.01e4
  • 2.03e4
  • 2.06e4
  • 2.14e4
35.60
  • 35.60
  • 32.59
  • 32.17
  • 31.10
  • 28.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
2.12e4
  • 2.12e4
  • 2.22e4
29.12
  • 29.12
  • 25.70
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.22e4
  • 2.22e4
25.82
  • 25.82
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

EMBLBC095360, BX469930
EnsemblENSDARG00000052037 (trim35-1)
Uniprot/SPTREMBLQ503E5, Q503E5_DANRE
ZFINZDB-GENE-050522-17 (trim35-1)

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