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D. rerio Gene: gabarapb - ENSDARG00000052082 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000052082
Namegabarapb
DescriptionGABA(A) receptor-associated protein b [Source:ZFIN;Acc:ZDB-GENE-101102-9]
OrganismDanio rerio (zebrafish)
Synonym(s)gabarap
Orthologs(s)20 orthologs
Paralog(s)7 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
300
  • 300
99.00
  • 99.00
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
362
  • 362
98.79
  • 98.79
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
378
  • 378
  • 852
98.74
  • 98.74
  • 97.15
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
403
  • 403
98.65
  • 98.65
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
510
  • 510
  • 682
98.30
  • 98.30
  • 97.72
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
582
  • 582
  • 843
98.05
  • 98.05
  • 97.18
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
595
  • 595
  • 636
  • 847
  • 1.09e3
  • 2.66e3
98.01
  • 98.01
  • 97.87
  • 97.17
  • 96.34
  • 91.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
629
  • 629
97.90
  • 97.90
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
651
  • 651
97.82
  • 97.82
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
701
  • 701
97.65
  • 97.65
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
749
  • 749
97.50
  • 97.50
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
772
  • 772
  • 1.20e3
97.42
  • 97.42
  • 95.98
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
779
  • 779
97.39
  • 97.39
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
882
  • 882
97.05
  • 97.05
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
917
  • 917
96.93
  • 96.93
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
962
  • 962
96.78
  • 96.78
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
989
  • 989
96.69
  • 96.69
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.01e3
  • 1.01e3
96.62
  • 96.62
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.08e3
  • 1.08e3
96.39
  • 96.39
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.11e3
  • 1.11e3
96.30
  • 96.30
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.14e3
  • 1.14e3
  • 1.51e3
96.17
  • 96.17
  • 94.93
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.32e3
  • 1.32e3
95.57
  • 95.57
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.49e3
  • 1.49e3
95.01
  • 95.01
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.43e3
  • 3.43e3
88.53
  • 88.53
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi12 species13 genesCompare expression
Bilateria19 species20 genesCompare expression

Orthology information comes from OMA : ENSDARG00000052082.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression
Opisthokonta7 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000052082.

Cross-references

EnsemblENSDARG00000052082 (gabarapb)
ZFINZDB-GENE-101102-9 (gabarapb)
Uniprot/SPTREMBLF1QY33, F1QY33_DANRE

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