D. rerio Gene: agxta - ENSDARG00000052099 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000052099
Nameagxta
Descriptionalanine-glyoxylate aminotransferase a [Source:ZFIN;Acc:ZDB-GENE-040718-16]
OrganismDanio rerio (zebrafish)
Synonym(s)agxtl, zgc:91879

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
371
  • 371
  • 9.34e3
  • 1.10e4
  • 1.12e4
  • 1.12e4
  • 1.21e4
98.76
  • 98.76
  • 68.74
  • 63.32
  • 62.49
  • 62.48
  • 59.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
855
  • 855
97.14
  • 97.14
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
885
  • 885
97.04
  • 97.04
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.04e3
  • 1.04e3
96.52
  • 96.52
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.13e3
  • 1.13e3
96.23
  • 96.23
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.32e3
  • 2.32e3
92.23
  • 92.23
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
2.41e3
  • 2.41e3
  • 4.75e3
  • 7.62e3
  • 8.99e3
  • 1.03e4
  • 1.36e4
  • 1.50e4
  • 1.60e4
  • 1.60e4
  • 1.62e4
  • 1.63e4
91.94
  • 91.94
  • 84.11
  • 74.49
  • 69.91
  • 65.61
  • 54.61
  • 49.92
  • 46.56
  • 46.37
  • 45.67
  • 45.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000068embryo stage
2.51e3
  • 2.51e3
  • 1.12e4
  • 1.45e4
  • 1.53e4
  • 1.66e4
  • 1.73e4
  • 1.78e4
  • 1.97e4
91.59
  • 91.59
  • 62.35
  • 51.39
  • 48.93
  • 44.27
  • 41.96
  • 40.40
  • 33.88
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.27e3
  • 3.27e3
89.07
  • 89.07
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
4.79e3
  • 4.79e3
  • 1.05e4
83.96
  • 83.96
  • 64.97
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
5.44e3
  • 5.44e3
  • 8.76e3
  • 9.19e3
81.80
  • 81.80
  • 70.67
  • 69.23
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.76e3
  • 8.76e3
70.68
  • 70.68
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.58e3
  • 9.58e3
67.92
  • 67.92
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.07
  • 64.07
AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
1.12e4
  • 1.12e4
  • 1.12e4
  • 1.20e4
  • 1.20e4
  • 1.26e4
62.48
  • 62.48
  • 62.48
  • 59.98
  • 59.98
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
1.34e4
  • 1.34e4
55.04
  • 55.04
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
  • 1.71e4
49.92
  • 49.92
  • 42.81
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
  • 1.80e4
48.31
  • 48.31
  • 39.63
AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
48.12
  • 48.12
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.58e4
  • 1.58e4
46.93
  • 46.93
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
  • 2.14e4
44.18
  • 44.18
  • 28.31
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.61
  • 40.61
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.88e4
  • 1.88e4
37.09
  • 37.09
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.97e4
  • 1.97e4
34.01
  • 34.01
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLCU467043
EnsemblENSDARG00000052099 (agxta)
Uniprot/SPTREMBLF1QY24, F1QY24_DANRE
ZFINZDB-GENE-040718-16 (agxta)

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