D. rerio Gene: atg4b - ENSDARG00000052104 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000052104
Nameatg4b
Descriptionautophagy related 4B, cysteine peptidase [Source:ZFIN;Acc:ZDB-GENE-040917-3]
OrganismDanio rerio (zebrafish)
Synonym(s)apg4b
Orthologs(s)24 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.23e3
  • 1.23e3
95.87
  • 95.87
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.51e3
  • 2.51e3
91.59
  • 91.59
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.93e3
  • 3.93e3
86.86
  • 86.86
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
5.80e3
  • 5.80e3
  • 6.37e3
  • 7.46e3
  • 7.79e3
  • 8.91e3
80.59
  • 80.59
  • 78.68
  • 75.04
  • 73.93
  • 70.16
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
5.93e3
  • 5.93e3
80.13
  • 80.13
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
6.04e3
  • 6.04e3
  • 7.14e3
79.76
  • 79.76
  • 76.11
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.54e3
  • 6.54e3
78.10
  • 78.10
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
6.66e3
  • 6.66e3
77.71
  • 77.71
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.68e3
  • 6.68e3
77.64
  • 77.64
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.78e3
  • 6.78e3
77.32
  • 77.32
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.22e3
  • 7.22e3
75.84
  • 75.84
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.28e3
  • 7.28e3
75.64
  • 75.64
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.49e3
  • 7.49e3
74.91
  • 74.91
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
7.68e3
  • 7.68e3
  • 1.10e4
74.28
  • 74.28
  • 63.28
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
7.75e3
  • 7.75e3
74.07
  • 74.07
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.82e3
  • 7.82e3
73.83
  • 73.83
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
8.02e3
  • 8.02e3
  • 1.04e4
73.16
  • 73.16
  • 65.15
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.83e3
  • 8.83e3
70.45
  • 70.45
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
8.85e3
  • 8.85e3
  • 9.11e3
70.38
  • 70.38
  • 69.49
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.90e3
  • 8.90e3
70.21
  • 70.21
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.92e3
  • 8.92e3
70.13
  • 70.13
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.53e3
  • 9.53e3
68.11
  • 68.11
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
9.92e3
  • 9.92e3
  • 1.02e4
66.78
  • 66.78
  • 65.71
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.17
  • 66.17
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.13e4
  • 1.13e4
62.10
  • 62.10
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSDARG00000052104.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Opisthokonta4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000052104.

Cross-references

EnsemblENSDARG00000052104 (atg4b)
ZFINZDB-GENE-040917-3 (atg4b)
EMBLBC076463
Uniprot/SPTREMBLX1WDI5, X1WDI5_DANRE
Uniprot/SWISSPROTATG4B_DANRE, Q6DG88

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