D. rerio Gene: rag2 - ENSDARG00000052121 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000052121
Namerag2
Descriptionrecombination activating gene 2 [Source:ZFIN;Acc:ZDB-GENE-990415-235]
OrganismDanio rerio (zebrafish)
Synonym(s)rag-2, zgc:136743

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.97e3
  • 2.97e3
90.05
  • 90.05
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.61e3
  • 4.61e3
84.56
  • 84.56
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.36e3
  • 7.36e3
75.35
  • 75.35
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
8.65e3
  • 8.65e3
71.04
  • 71.04
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
8.96e3
  • 8.96e3
  • 8.96e3
69.99
  • 69.99
  • 69.99
AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000039Larval:Days 7-13
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
1.12e4
  • 1.12e4
  • 1.12e4
  • 1.12e4
  • 1.49e4
62.50
  • 62.50
  • 62.50
  • 62.49
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.13
  • 61.13
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.20e4
  • 1.20e4
  • 1.31e4
59.89
  • 59.89
  • 56.23
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
1.39e4
  • 1.39e4
53.39
  • 53.39
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.42e4
  • 1.42e4
  • 1.86e4
52.33
  • 52.33
  • 37.80
AEIR
  • AEIR
  • AEIR
CL:0000084T cell
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.19
  • 46.19
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
1.66e4
  • 1.66e4
  • 1.80e4
  • 2.01e4
  • 2.26e4
44.48
  • 44.48
  • 39.62
  • 32.82
  • 24.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.52
  • 40.52
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.80e4
  • 1.80e4
39.64
  • 39.64
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
2.09e4
  • 2.09e4
  • 2.13e4
30.14
  • 30.14
  • 28.80
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.15e4
  • 2.15e4
27.92
  • 27.92
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.16e4
  • 2.16e4
27.64
  • 27.64
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLAL935203, BC115249
EnsemblENSDARG00000052121 (rag2)
Uniprot/SPTREMBLQ1RLW7, Q1RLW7_DANRE
ZFINZDB-GENE-990415-235 (rag2)

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