D. rerio Gene: rag1 - ENSDARG00000052122 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000052122
Namerag1
Descriptionrecombination activating gene 1 [Source:ZFIN;Acc:ZDB-GENE-990415-234]
OrganismDanio rerio (zebrafish)
Synonym(s)etid309719.25, rag-1, recombinase

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.48e3
  • 1.48e3
  • 2.01e4
95.03
  • 95.03
  • 32.66
AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000039Larval:Days 7-13
  • ZFS:0000038Larval:Day 6
  • ZFS:0000043Juvenile:Days 45-89
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
1.87e3
  • 1.87e3
  • 2.13e3
  • 3.73e3
  • 3.73e3
  • 7.47e3
  • 7.47e3
  • 1.49e4
  • 1.49e4
93.75
  • 93.75
  • 92.86
  • 87.50
  • 87.50
  • 75.00
  • 75.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000084T cell
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
3.73e3
  • 3.73e3
  • 7.47e3
  • 1.49e4
  • 1.49e4
87.50
  • 87.50
  • 75.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000838lymphoid lineage restricted progenitor cell
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
4.98e3
  • 4.98e3
  • 1.49e4
83.34
  • 83.34
  • 50.00
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.78e3
  • 6.78e3
77.29
  • 77.29
AEIR
  • AEIR
CL:0000051common lymphoid progenitor
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
7.47e3
  • 7.47e3
  • 7.47e3
75.00
  • 75.00
  • 75.00
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • ZFS:0000043Juvenile:Days 45-89
  • UBERON:0000066fully formed stage
7.47e3
  • 7.47e3
  • 1.17e4
75.00
  • 75.00
  • 60.70
AEIR
  • AEIR
  • AEIR
UBERON:0005562thymus primordium
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000031Pharyngula:Prim-25
7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000041Larval:Days 21-29
  • ZFS:0000042Juvenile:Days 30-44
8.96e3
  • 8.96e3
  • 9.96e3
  • 9.96e3
  • 1.08e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
69.99
  • 69.99
  • 66.66
  • 66.65
  • 63.87
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000039Larval:Days 7-13
  • ZFS:0000037Larval:Day 5
1.12e4
  • 1.12e4
  • 1.49e4
  • 1.49e4
62.50
  • 62.50
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.98
  • 60.98
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000104life cycle
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
1.24e4
  • 1.24e4
  • 1.47e4
  • 1.71e4
  • 1.79e4
  • 1.80e4
  • 1.83e4
  • 1.83e4
58.56
  • 58.56
  • 50.90
  • 42.71
  • 40.18
  • 39.85
  • 38.62
  • 38.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000827pro-T cell
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.63e4
  • 1.63e4
45.58
  • 45.58
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
1.71e4
  • 1.71e4
  • 1.79e4
  • 1.98e4
42.74
  • 42.74
  • 40.13
  • 33.70
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
1.80e4
  • 1.80e4
39.64
  • 39.64
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.85e4
  • 1.85e4
38.13
  • 38.13
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
1.89e4
  • 1.89e4
  • 2.04e4
  • 2.08e4
  • 2.13e4
36.59
  • 36.59
  • 31.69
  • 30.24
  • 28.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
36.13
  • 36.13
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.04e4
  • 2.04e4
31.59
  • 31.59
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.19e4
  • 2.19e4
26.83
  • 26.83
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAL935203
EnsemblENSDARG00000052122 (rag1)
Uniprot/SPTREMBLF1QD74, F1QD74_DANRE
ZFINZDB-GENE-990415-234 (rag1)

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