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D. rerio Gene: slc1a2a - ENSDARG00000052138 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000052138
Nameslc1a2a
Descriptionsolute carrier family 1 (glial high affinity glutamate transporter), member 2a [Source:ZFIN;Acc:ZDB-GENE-100422-11]
OrganismDanio rerio (zebrafish)
Synonym(s)eaat2b, slc1a2b
Orthologs(s)1 orthologs
Paralog(s)11 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
514
  • 514
98.28
  • 98.28
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.34e3
  • 3.34e3
  • 7.37e3
88.81
  • 88.81
  • 75.32
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
7.46e3
  • 7.46e3
  • 2.19e4
  • 2.38e4
  • 2.41e4
75.03
  • 75.03
  • 26.64
  • 20.39
  • 19.38
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
9.13e3
  • 9.13e3
  • 2.55e4
69.43
  • 69.43
  • 14.59
AEIR
  • AEIR
  • AEIR
UBERON:0001789outer nuclear layer of retina
  • ZFS:0000035Larval:Protruding-mouth
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
  • 2.62e4
54.53
  • 54.53
  • 12.27
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.04e4
  • 2.04e4
31.74
  • 31.74
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.35e4
  • 2.35e4
21.45
  • 21.45
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Bilateria1 species1 geneCompare expression

Orthology information comes from OMA : ENSDARG00000052138.

Paralogs (same species)

Paralogy information comes from OMA : ENSDARG00000052138.

Cross-references

EnsemblENSDARG00000052138 (slc1a2a)
ZFINZDB-GENE-100422-11 (slc1a2a)
EMBLCR318591, HM138692
Uniprot/SPTREMBLD7RVR8, D7RVR8_DANRE

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