D. rerio Gene: si:ch211-236k19.2 - ENSDARG00000052165 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000052165
Namesi:ch211-236k19.2
Descriptionsi:ch211-236k19.2 [Source:ZFIN;Acc:ZDB-GENE-060531-41]
OrganismDanio rerio (zebrafish)
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.19e4
  • 1.19e4
60.07
  • 60.07
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
51.53
  • 51.53
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.52e4
  • 1.52e4
49.07
  • 49.07
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.87
  • 48.87
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
1.72e4
  • 1.72e4
42.51
  • 42.51
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.99e4
  • 1.99e4
33.30
  • 33.30
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.02e4
  • 2.02e4
32.40
  • 32.40
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
2.13e4
  • 2.13e4
  • 2.48e4
  • 2.50e4
  • 2.77e4
28.66
  • 28.66
  • 16.83
  • 16.35
  • 7.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.23e4
  • 2.23e4
25.20
  • 25.20
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.28e4
  • 2.28e4
23.72
  • 23.72
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000052165.

Cross-references

EnsemblENSDARG00000052165 (si:ch211-236k19.2)
ZFINZDB-GENE-060531-41 (si:ch211-236k19.2)
EMBLBX255921
Uniprot/SPTREMBLF6P152, F6P152_DANRE

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