D. rerio Gene: rbfox2 - ENSDARG00000052182 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000052182
Namerbfox2
DescriptionRNA binding protein, fox-1 homolog (C. elegans) 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2464]
OrganismDanio rerio (zebrafish)
Synonym(s)rbm9, zgc:85694

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
1.16e3
  • 1.16e3
  • 4.77e3
  • 1.12e4
  • 1.49e4
96.13
  • 96.13
  • 84.02
  • 62.50
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
1.37e3
  • 1.37e3
  • 2.51e3
  • 7.04e3
  • 7.40e3
  • 7.77e3
  • 9.07e3
95.40
  • 95.40
  • 91.61
  • 76.41
  • 75.22
  • 73.97
  • 69.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.45e3
  • 1.45e3
95.16
  • 95.16
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.61e3
  • 1.61e3
94.63
  • 94.63
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
1.66e3
  • 1.66e3
  • 2.14e3
  • 7.71e3
  • 8.27e3
  • 8.63e3
94.45
  • 94.45
  • 92.83
  • 74.18
  • 72.30
  • 71.11
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.69e3
  • 1.69e3
94.33
  • 94.33
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.70e3
  • 1.70e3
  • 1.92e3
  • 1.99e3
  • 2.47e3
  • 3.34e3
  • 6.71e3
  • 7.22e3
  • 7.25e3
  • 9.55e3
  • 1.15e4
94.30
  • 94.30
  • 93.58
  • 93.34
  • 91.73
  • 88.81
  • 77.52
  • 75.84
  • 75.74
  • 68.01
  • 61.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.80e3
  • 1.80e3
93.98
  • 93.98
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.88e3
  • 1.88e3
  • 5.50e3
93.71
  • 93.71
  • 81.59
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
2.00e3
  • 2.00e3
  • 9.98e3
  • 1.49e4
93.32
  • 93.32
  • 66.59
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
2.22e3
  • 2.22e3
  • 8.76e3
  • 1.07e4
92.58
  • 92.58
  • 70.65
  • 64.06
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.46e3
  • 2.46e3
91.75
  • 91.75
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000036Larval:Day 4
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000109gastrula stage
2.52e3
  • 2.52e3
  • 2.56e3
  • 2.99e3
  • 2.99e3
  • 3.19e3
  • 3.20e3
  • 3.32e3
  • 3.44e3
  • 3.52e3
  • 3.57e3
  • 3.58e3
  • 3.72e3
  • 4.06e3
  • 5.67e3
  • 1.23e4
  • 1.35e4
  • 1.45e4
  • 1.49e4
91.57
  • 91.57
  • 91.42
  • 90.00
  • 89.99
  • 89.34
  • 89.28
  • 88.89
  • 88.48
  • 88.21
  • 88.03
  • 88.03
  • 87.54
  • 86.42
  • 81.00
  • 58.76
  • 54.65
  • 51.56
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.28e3
  • 3.28e3
89.02
  • 89.02
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.69e3
  • 3.69e3
87.65
  • 87.65
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
3.83e3
  • 3.83e3
  • 3.96e3
  • 7.44e3
87.19
  • 87.19
  • 86.73
  • 75.10
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.31e3
  • 4.31e3
85.56
  • 85.56
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
4.84e3
  • 4.84e3
83.78
  • 83.78
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
4.93e3
  • 4.93e3
  • 1.39e4
83.49
  • 83.49
  • 53.41
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.31e3
  • 5.31e3
82.24
  • 82.24
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.49e3
  • 5.49e3
81.64
  • 81.64
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.51e3
  • 5.51e3
81.56
  • 81.56
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.71e3
  • 5.71e3
80.89
  • 80.89
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.71e3
  • 5.71e3
80.87
  • 80.87
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.40e3
  • 6.40e3
78.59
  • 78.59
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.27e3
  • 7.27e3
75.66
  • 75.66
AEIR
  • AEIR
UBERON:0001846internal ear
  • UBERON:0000068embryo stage
7.76e3
  • 7.76e3
74.03
  • 74.03
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.01e3
  • 8.01e3
73.16
  • 73.16
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
8.34e3
  • 8.34e3
72.09
  • 72.09
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
8.98e3
  • 8.98e3
69.93
  • 69.93
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.74e3
  • 9.74e3
67.40
  • 67.40
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
9.87e3
  • 9.87e3
  • 1.35e4
66.95
  • 66.95
  • 54.73
AEIR
  • AEIR
  • AEIR
UBERON:0005419pectoral appendage bud
  • ZFS:0000031Pharyngula:Prim-25
1.12e4
  • 1.12e4
62.49
  • 62.49
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
  • 1.54e4
60.27
  • 60.27
  • 48.36
AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000029Pharyngula:Prim-5
1.38e4
  • 1.38e4
53.83
  • 53.83
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.02
  • 53.02
AEIR
  • AEIR
UBERON:0008897fin
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.91
  • 49.91
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

Do not show this banner again