Gene: rcvrna - ENSDARG00000052223 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000052223
Name	rcvrna
Description	recoverin a [Source:ZFIN;Acc:ZDB-GENE-050913-106]
Organism	Danio rerio (zebrafish)
Synonym(s)	rcv1a, zgc:114180, zgc:114180gn
Orthologs(s)	14 orthologs
Paralog(s)	49 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	30.0 30.0	99.90 99.90	AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	701 701 1.57e3	97.66 97.66 94.76	AEIR AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000037Larval:Day 5 ZFS:0000033Hatching:Long-pec ZFS:0000029Pharyngula:Prim-5 UBERON:0004707pharyngula stage UBERON:0000068embryo stage	796 796 5.12e3 1.83e4 1.92e4 2.03e4	97.34 97.34 82.85 38.78 35.68 32.04	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	1.18e3 1.18e3 1.53e4	96.05 96.05 48.61	AEIR AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	6.94e3 6.94e3	76.76 76.76	AEIR AEIR
UBERON:0001787	photoreceptor layer of retina	[+] 1 stage ZFS:0000037Larval:Day 5	1.12e4 1.12e4	62.49 62.49	AEIR AEIR
UBERON:0001905	pineal body	[+] 1 stage ZFS:0000030Pharyngula:Prim-15	1.40e4 1.40e4	53.10 53.10	AEIR AEIR
UBERON:0000307	blastula	[+] 1 stage ZFS:0000011Blastula:1k-cell	1.60e4 1.60e4	46.44 46.44	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.99e4 1.99e4	33.38 33.38	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	2.22e4 2.22e4	25.76 25.76	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

In situ hybridization data: ZFIN
RNA-Seq data: Bgee

Sources of raw data:

In situ hybridization data: ZFIN
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	14 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum)	14 genes ENSG00000109047 RCVRN ENSMUSG00000020907 Rcvrn ENSPTRG00000008762 RCVRN ENSGGOG00000008541 RCVRN ENSMMUG00000018091 RCVRN ENSRNOG00000003633 Rcvrn ENSBTAG00000025088 RCVRN ENSECAG00000018878 RCVRN ENSOCUG00000015504 RCVRN ENSCAFG00000017451 RCVRN ENSFCAG00000022515 RCVRN ENSCPOG00000019569 RCVRN ENSEEUG00000008548 RCVRN ENSMODG00000001498 RCVRN	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000052223.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Euteleostomi	1 gene ENSDARG00000059257 RCVRN (1 to many)	Compare expression	[+]
Bilateria	3 genes ENSDARG00000009637 rcvrn3 ENSDARG00000019902 rcvrn2 ENSDARG00000059257 RCVRN (1 to many)	Compare expression	[+]
Eukaryota	49 genes ENSDARG00000008030 myl9b ENSDARG00000008494 myl6 ENSDARG00000009637 rcvrn3 ENSDARG00000010454 guca1a ENSDARG00000011334 ncaldb ENSDARG00000011400 tnnc1a ENSDARG00000011519 myl4 ENSDARG00000011825 cetn3 ENSDARG00000014196 myl1 ENSDARG00000015050 calm3a ENSDARG00000017441 mylz3 ENSDARG00000018397 hpca ENSDARG00000019096 myl7 ENSDARG00000019902 rcvrn2 ENSDARG00000021811 calm1a ENSDARG00000022763 hpcal1 ENSDARG00000023228 vsnl1a ENSDARG00000025326 myl12.2 ENSDARG00000025788 chp2 ENSDARG00000030758 guca1c ENSDARG00000031427 calm2a ENSDARG00000032976 cmlc1 ENSDARG00000033738 zgc:153867 ENSDARG00000034187 calm1b ENSDARG00000037539 tnnc1b ENSDARG00000038123 myl9a ENSDARG00000041215 cetn4 ENSDARG00000042245 myl13 ENSDARG00000044053 vsnl1b ENSDARG00000044629 guca1d ENSDARG00000052859 chp1 ENSDARG00000053424 myl2b ENSDARG00000054186 ncs1b ENSDARG00000055229 ncs1a ENSDARG00000059257 RCVRN (1 to many) ENSDARG00000062592 myl10 ENSDARG00000069360 ppp3r1b ENSDARG00000070491 hpcal4 ENSDARG00000070688 ncalda ENSDARG00000070835 tnnc2 ENSDARG00000074057 calm3b ENSDARG00000074323 efcab2 ENSDARG00000092659 ppp3r1a ENSDARG00000095002 TNNC2 (1 to many) ENSDARG00000099712 MYL3 ENSDARG00000099766 myl12.1 ENSDARG00000100825 calm3a ENSDARG00000101510 cetn2 ENSDARG00000104722 MYL2 (1 to many)	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000052223.

Cross-references

Ensembl	ENSDARG00000052223 (rcvrna)
ZFIN	ZDB-GENE-050913-106 (rcvrna)
EMBL	BC097229, BX649397, KT325590
Uniprot/SPTREMBL	Q4V8S2, Q4V8S2_DANRE