D. rerio Gene: slc22a18 - ENSDARG00000052271 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000052271
Nameslc22a18
Descriptionsolute carrier family 22, member 18 [Source:ZFIN;Acc:ZDB-GENE-051120-165]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:123168
Orthologs(s)14 orthologs
Paralog(s)8 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.13e3
  • 1.13e3
96.21
  • 96.21
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.18e3
  • 1.18e3
96.06
  • 96.06
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.86e3
  • 2.86e3
90.42
  • 90.42
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
2.86e3
  • 2.86e3
  • 8.96e3
90.42
  • 90.42
  • 70.01
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.22e3
  • 4.22e3
  • 6.55e3
85.88
  • 85.88
  • 78.05
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.41e3
  • 4.41e3
85.25
  • 85.25
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
5.17e3
  • 5.17e3
  • 8.59e3
  • 9.49e3
  • 1.03e4
  • 1.20e4
82.68
  • 82.68
  • 71.24
  • 68.24
  • 65.62
  • 59.96
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.40e3
  • 5.40e3
81.91
  • 81.91
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.49e3
  • 5.49e3
81.61
  • 81.61
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.61e3
  • 6.61e3
77.88
  • 77.88
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
7.98e3
  • 7.98e3
73.28
  • 73.28
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.21e3
  • 8.21e3
72.52
  • 72.52
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
8.78e3
  • 8.78e3
70.61
  • 70.61
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
9.52e3
  • 9.52e3
  • 9.83e3
68.13
  • 68.13
  • 67.07
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.88
  • 65.88
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.04e4
  • 1.04e4
65.31
  • 65.31
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.93
  • 60.93
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.22e4
  • 1.22e4
59.07
  • 59.07
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.23
  • 58.23
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.17
  • 58.17
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.29e4
  • 1.29e4
  • 1.58e4
56.71
  • 56.71
  • 47.12
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
41.17
  • 41.17
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi13 species13 genesCompare expression
Bilateria14 species14 genesCompare expression

Orthology information comes from OMA : ENSDARG00000052271.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Opisthokonta8 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000052271.

Cross-references

EnsemblENSDARG00000052271 (slc22a18)
ZFINZDB-GENE-051120-165 (slc22a18)
EMBLBX842701
Uniprot/SPTREMBLE9QD56, E9QD56_DANRE, F1QCN1, F1QCN1_DANRE

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