D. rerio Gene: pdcd11 - ENSDARG00000052480 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000052480
Namepdcd11
Descriptionprogrammed cell death 11 [Source:ZFIN;Acc:ZDB-GENE-030131-4076]
OrganismDanio rerio (zebrafish)
Synonym(s)cb680, im:7148359, sb:cb680, wu:fc68c10
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
2.15e3
  • 2.15e3
  • 3.66e3
  • 8.46e3
  • 1.07e4
  • 1.08e4
92.79
  • 92.79
  • 87.74
  • 71.68
  • 64.03
  • 63.91
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
2.25e3
  • 2.25e3
  • 2.67e3
  • 6.70e3
  • 7.26e3
  • 7.47e3
  • 7.61e3
92.48
  • 92.48
  • 91.06
  • 77.56
  • 75.68
  • 74.97
  • 74.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.59e3
  • 2.59e3
91.33
  • 91.33
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
2.98e3
  • 2.98e3
  • 3.27e3
  • 4.88e3
  • 5.12e3
  • 5.82e3
  • 5.87e3
  • 7.69e3
  • 8.61e3
  • 9.52e3
  • 1.37e4
90.03
  • 90.03
  • 89.05
  • 83.66
  • 82.86
  • 80.52
  • 80.34
  • 74.26
  • 71.18
  • 68.12
  • 54.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
3.11e3
  • 3.11e3
89.58
  • 89.58
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.46e3
  • 4.46e3
85.07
  • 85.07
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.22e3
  • 5.22e3
82.52
  • 82.52
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.25e3
  • 5.25e3
82.41
  • 82.41
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
5.47e3
  • 5.47e3
  • 9.72e3
81.70
  • 81.70
  • 67.45
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.65e3
  • 5.65e3
81.08
  • 81.08
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.76e3
  • 5.76e3
80.71
  • 80.71
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.21e3
  • 6.21e3
79.20
  • 79.20
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.22e3
  • 6.22e3
79.17
  • 79.17
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.48e3
  • 6.48e3
78.30
  • 78.30
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
6.50e3
  • 6.50e3
78.24
  • 78.24
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.68e3
  • 6.68e3
77.63
  • 77.63
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000106zygote stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
6.83e3
  • 6.83e3
  • 6.98e3
  • 7.69e3
  • 7.74e3
  • 7.86e3
  • 7.91e3
  • 7.92e3
  • 8.79e3
  • 1.01e4
  • 1.10e4
  • 1.16e4
  • 1.22e4
  • 1.24e4
  • 1.25e4
  • 1.29e4
  • 1.39e4
  • 1.44e4
  • 1.48e4
77.13
  • 77.13
  • 76.62
  • 74.27
  • 74.07
  • 73.70
  • 73.52
  • 73.49
  • 70.57
  • 66.05
  • 63.24
  • 61.26
  • 59.27
  • 58.33
  • 58.00
  • 56.87
  • 53.49
  • 51.88
  • 50.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
6.97e3
  • 6.97e3
  • 1.12e4
  • 1.21e4
76.67
  • 76.67
  • 62.48
  • 59.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
7.58e3
  • 7.58e3
  • 9.78e3
74.61
  • 74.61
  • 67.24
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.69e3
  • 7.69e3
74.24
  • 74.24
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.79e3
  • 7.79e3
73.92
  • 73.92
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
7.92e3
  • 7.92e3
  • 1.11e4
  • 1.41e4
73.47
  • 73.47
  • 62.84
  • 52.63
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
8.02e3
  • 8.02e3
73.15
  • 73.15
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
8.68e3
  • 8.68e3
  • 1.21e4
  • 1.22e4
70.94
  • 70.94
  • 59.50
  • 59.06
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
9.22e3
  • 9.22e3
  • 9.52e3
69.14
  • 69.14
  • 68.13
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.27e3
  • 9.27e3
68.96
  • 68.96
AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
9.44e3
  • 9.44e3
  • 9.67e3
  • 9.96e3
  • 1.08e4
68.40
  • 68.40
  • 67.63
  • 66.65
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
9.68e3
  • 9.68e3
67.57
  • 67.57
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.75
  • 64.75
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000026Segmentation:14-19 somites
1.07e4
  • 1.07e4
64.26
  • 64.26
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
1.09e4
  • 1.09e4
  • 1.12e4
  • 1.12e4
  • 1.18e4
  • 1.24e4
63.37
  • 63.37
  • 62.48
  • 62.48
  • 60.39
  • 58.58
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.11e4
  • 1.11e4
62.72
  • 62.72
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
1.11e4
  • 1.11e4
  • 1.16e4
  • 1.17e4
  • 1.18e4
  • 1.20e4
62.70
  • 62.70
  • 61.23
  • 60.84
  • 60.63
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
1.26e4
  • 1.26e4
  • 1.26e4
  • 1.28e4
57.87
  • 57.87
  • 57.87
  • 57.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
1.33e4
  • 1.33e4
  • 1.38e4
  • 1.39e4
  • 1.39e4
  • 1.40e4
  • 1.40e4
  • 1.41e4
55.53
  • 55.53
  • 53.83
  • 53.55
  • 53.55
  • 53.10
  • 53.10
  • 52.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.91
  • 50.91
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria19 species19 genesCompare expression

Orthology information comes from OMA : ENSDARG00000052480.

Cross-references

EnsemblENSDARG00000052480 (pdcd11)
ZFINZDB-GENE-030131-4076 (pdcd11)
EMBLCR812943
Uniprot/SPTREMBLB8JIP9, B8JIP9_DANRE, F1R353, F1R353_DANRE

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