D. rerio Gene: arhgef11 - ENSDARG00000052482 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000052482
Namearhgef11
DescriptionRho guanine nucleotide exchange factor (GEF) 11 [Source:ZFIN;Acc:ZDB-GENE-070604-1]
OrganismDanio rerio (zebrafish)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.08e3
  • 1.08e3
  • 1.96e3
  • 2.68e3
  • 4.26e3
96.37
  • 96.37
  • 93.42
  • 91.03
  • 85.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.37e3
  • 2.37e3
92.08
  • 92.08
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.56e3
  • 2.56e3
91.43
  • 91.43
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
  • UBERON:00072322 cell stage
  • ZFS:0000042Juvenile:Days 30-44
2.59e3
  • 2.59e3
  • 4.63e3
  • 4.74e3
  • 4.77e3
  • 4.95e3
  • 5.22e3
  • 5.36e3
  • 5.40e3
  • 5.52e3
  • 5.60e3
  • 6.02e3
  • 6.21e3
  • 6.72e3
  • 6.79e3
  • 6.88e3
91.33
  • 91.33
  • 84.49
  • 84.13
  • 84.03
  • 83.41
  • 82.54
  • 82.07
  • 81.93
  • 81.51
  • 81.25
  • 79.84
  • 79.21
  • 77.51
  • 77.27
  • 76.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
2.75e3
  • 2.75e3
  • 5.29e3
90.81
  • 90.81
  • 82.28
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
2.87e3
  • 2.87e3
  • 3.45e3
  • 4.39e3
  • 4.66e3
  • 4.86e3
90.40
  • 90.40
  • 88.45
  • 85.31
  • 84.39
  • 83.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.97e3
  • 2.97e3
90.07
  • 90.07
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.20e3
  • 3.20e3
89.30
  • 89.30
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0004707pharyngula stage
3.22e3
  • 3.22e3
  • 3.36e3
  • 3.57e3
  • 3.90e3
  • 4.37e3
  • 4.73e3
  • 5.03e3
  • 5.86e3
  • 6.18e3
  • 6.28e3
89.21
  • 89.21
  • 88.75
  • 88.06
  • 86.94
  • 85.37
  • 84.16
  • 83.18
  • 80.38
  • 79.31
  • 78.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
3.24e3
  • 3.24e3
89.14
  • 89.14
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.29e3
  • 3.29e3
88.97
  • 88.97
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.60e3
  • 3.60e3
87.95
  • 87.95
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
3.68e3
  • 3.68e3
  • 3.83e3
  • 4.37e3
  • 4.51e3
  • 5.08e3
  • 6.59e3
87.69
  • 87.69
  • 87.18
  • 85.38
  • 84.91
  • 83.00
  • 77.93
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.75e3
  • 3.75e3
87.46
  • 87.46
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
3.92e3
  • 3.92e3
  • 5.23e3
  • 5.70e3
86.89
  • 86.89
  • 82.49
  • 80.92
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
3.99e3
  • 3.99e3
  • 4.78e3
86.63
  • 86.63
  • 84.00
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
4.00e3
  • 4.00e3
  • 5.38e3
86.59
  • 86.59
  • 81.99
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
4.04e3
  • 4.04e3
86.47
  • 86.47
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000029Pharyngula:Prim-5
4.36e3
  • 4.36e3
  • 5.33e3
  • 1.12e4
85.42
  • 85.42
  • 82.14
  • 62.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.36e3
  • 4.36e3
85.42
  • 85.42
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
5.04e3
  • 5.04e3
83.12
  • 83.12
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.07e3
  • 5.07e3
83.03
  • 83.03
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.38e3
  • 5.38e3
82.00
  • 82.00
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
5.48e3
  • 5.48e3
81.66
  • 81.66
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.58e3
  • 5.58e3
81.31
  • 81.31
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
5.62e3
  • 5.62e3
81.19
  • 81.19
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.91e3
  • 5.91e3
80.21
  • 80.21
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.01e3
  • 7.01e3
76.53
  • 76.53
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.13e3
  • 7.13e3
76.14
  • 76.14
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.53e3
  • 7.53e3
74.78
  • 74.78
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.69e3
  • 7.69e3
74.24
  • 74.24
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
7.90e3
  • 7.90e3
73.55
  • 73.55
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
9.66e3
  • 9.66e3
67.67
  • 67.67
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
55.24
  • 55.24
AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EnsemblENSDARG00000052482 (arhgef11)
Uniprot/SPTREMBLB0S635, B0S635_DANRE, F1QUN4, F1QUN4_DANRE
ZFINZDB-GENE-070604-1 (arhgef11)

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