D. rerio Gene: HMHA1 (1 to many) - ENSDARG00000052496 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000052496
NameHMHA1 (1 to many)
Descriptionhistocompatibility (minor) HA-1 [Source:HGNC Symbol;Acc:HGNC:17102]
OrganismDanio rerio (zebrafish)
Synonym(s)arhgap45, ha-1, kiaa0223
Orthologs(s)16 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.91e3
  • 1.91e3
93.60
  • 93.60
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
5.83e3
  • 5.83e3
  • 7.16e3
80.48
  • 80.48
  • 76.03
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.09e3
  • 6.09e3
79.60
  • 79.60
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
6.97e3
  • 6.97e3
  • 1.75e4
76.66
  • 76.66
  • 41.56
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.15e3
  • 7.15e3
76.05
  • 76.05
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.21e3
  • 8.21e3
72.51
  • 72.51
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.12
  • 66.12
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.83
  • 65.83
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.05e4
  • 1.05e4
  • 1.15e4
64.80
  • 64.80
  • 61.37
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.91
  • 61.91
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.34
  • 60.34
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.26
  • 60.26
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.77
  • 56.77
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.74
  • 56.74
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.87
  • 53.87
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.45
  • 53.45
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.89
  • 48.89
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.35
  • 46.35
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.37
  • 44.37
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
1.84e4
  • 1.84e4
  • 1.92e4
  • 1.95e4
  • 2.37e4
38.34
  • 38.34
  • 35.79
  • 34.79
  • 20.54
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.92e4
  • 1.92e4
35.76
  • 35.76
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
2.02e4
  • 2.02e4
32.41
  • 32.41
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Neopterygii1 geneCompare expression
Chordata3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000052496.

Cross-references

EnsemblENSDARG00000052496 (HMHA1 (1 to many))
HGNCHGNC:17102 (HMHA1 (1 to many))
EMBLCABZ01024419, CABZ01024420, CABZ01024421, CABZ01024422, CABZ01024423, CABZ01024424, CABZ01024425, CABZ01024426
Uniprot/SPTREMBLA0A0G2KVD5, A0A0G2KVD5_DANRE, A0A0G2KWM4, A0A0G2KWM4_DANRE, E7F9Z6, E7F9Z6_DANRE

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