D. rerio Gene: LIN28B - ENSDARG00000052511 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000052511
NameLIN28B
Descriptionlin-28 homolog B (C. elegans) [Source:HGNC Symbol;Acc:HGNC:32207]
OrganismDanio rerio (zebrafish)
Synonym(s)csdd2, flj16517

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.21e3
  • 1.21e3
95.94
  • 95.94
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
7.05e3
  • 7.05e3
  • 7.98e3
76.40
  • 76.40
  • 73.29
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
7.21e3
  • 7.21e3
  • 1.24e4
75.85
  • 75.85
  • 58.38
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
8.02e3
  • 8.02e3
73.14
  • 73.14
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.94e3
  • 8.94e3
70.06
  • 70.06
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
1.06e4
  • 1.06e4
  • 1.21e4
  • 1.57e4
  • 1.78e4
  • 2.41e4
64.40
  • 64.40
  • 59.39
  • 47.57
  • 40.54
  • 19.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.17e4
  • 1.17e4
60.82
  • 60.82
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.49e4
  • 1.49e4
  • 1.50e4
50.20
  • 50.20
  • 49.80
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.53e4
  • 1.53e4
48.93
  • 48.93
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.71
  • 43.71
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.07
  • 42.07
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.90e4
  • 1.90e4
36.25
  • 36.25
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
33.59
  • 33.59
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.99e4
  • 1.99e4
33.38
  • 33.38
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.01e4
  • 2.01e4
32.77
  • 32.77
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.09e4
  • 2.09e4
29.93
  • 29.93
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.14e4
  • 2.14e4
28.47
  • 28.47
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.32e4
  • 2.32e4
22.20
  • 22.20
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.40e4
  • 2.40e4
19.69
  • 19.69
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.56e4
  • 2.56e4
14.40
  • 14.40
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000052511 (LIN28B)
HGNCHGNC:32207 (LIN28B)
Uniprot/SPTREMBLE7F3W9, E7F3W9_DANRE

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