D. rerio Gene: porcn - ENSDARG00000052558 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000052558
Nameporcn
Descriptionporcupine homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-081105-87]
OrganismDanio rerio (zebrafish)
Synonym(s)porcn1, si:ch211-216k22.9

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:00072368 cell stage
4.41e3
  • 4.41e3
  • 6.64e3
  • 6.79e3
85.22
  • 85.22
  • 77.77
  • 77.27
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.10e3
  • 6.10e3
79.57
  • 79.57
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
8.91e3
  • 8.91e3
70.17
  • 70.17
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.00e4
  • 1.00e4
66.50
  • 66.50
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.01e4
  • 1.01e4
66.20
  • 66.20
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
1.15e4
  • 1.15e4
  • 1.21e4
  • 1.56e4
  • 1.64e4
  • 1.65e4
61.47
  • 61.47
  • 59.55
  • 47.84
  • 45.25
  • 44.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.27e4
  • 1.27e4
  • 1.50e4
57.39
  • 57.39
  • 49.91
AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
56.22
  • 56.22
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000026Segmentation:14-19 somites
1.33e4
  • 1.33e4
55.53
  • 55.53
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.37e4
  • 1.37e4
  • 1.70e4
54.10
  • 54.10
  • 43.19
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.21
  • 53.21
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.41e4
  • 1.41e4
52.91
  • 52.91
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000026Segmentation:14-19 somites
1.42e4
  • 1.42e4
52.47
  • 52.47
AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000029Pharyngula:Prim-5
1.43e4
  • 1.43e4
52.14
  • 52.14
AEIR
  • AEIR
UBERON:2007042spinal cord neural tube
  • ZFS:0000026Segmentation:14-19 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.05e4
  • 2.05e4
31.44
  • 31.44
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.09e4
  • 2.09e4
30.03
  • 30.03
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBX927144
EnsemblENSDARG00000052558 (porcn)
Uniprot/SPTREMBLB0S7W7, B0S7W7_DANRE
ZFINZDB-GENE-081105-87 (porcn)

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